PIER FEDERICO GHERARDINI

Associate professor


email: pier.federico.gherardini@uniroma2.it
phone: 06 7259 4324
building: SOGENE
room: 324


 


Education and training

2004 - B.Sc. cum laude in Biotechnology – University of Rome, Tor Vergata. Rome, Italy

2006 - M.Sc. cum laude in Bioinformatics – University of Rome, Tor Vergata. Rome, Italy

2009 - PhD in Cellular and Molecular Biology – University of Rome, Tor Vergata. Rome, Italy

2016 - Ignite Certificate Program in Innovation and Entrepreneurship – Stanford Graduate School of Business, Stanford, CA, USA

2020 - Developing Executive Leadership training certificate – American Management Association

Employment

Sep 2005 – Nov 2005 Visiting scientist, laboratory of Prof. Michael JE Sternberg – Imperial College, London, UK

Jan 2010 – Oct 2012 Post-doctoral fellow, laboratory of Prof.ssa Manuela Helmer-Citterich – University of Rome, Tor Vergata, Rome, Italy Oct 2012 – Aug 2016 Post-doctoral fellow, laboratory of prof. Garry Nolan – Stanford University Medical School, Stanford, CA, USA

Nov 2015 Co-founder HepaTx corporation – Palo Alto, CA, USA

Sep 2016 – Jan 2018 Senior scientist, Parker Institute for Cancer Immunotherapy – San Francisco, CA, USA

Jan 2018 – Jan 2019 Associate Director of Technology Development, Parker Institute for Cancer Immunotherapy – San Francisco, CA, USA

Jan 2019 – Feb 2021 Director of Informatics, Parker Institute for Cancer Immunotherapy – San Francisco, CA, USA

Dec 2021 – May 2023 Senior Director of Computational Biology, Stealth Startup – Palo Alto, CA, USA

Jan 2022 – Present  Associate Professor of Molecular Biology (BIO/11) – University of Rome, Tor Vergata, Rome, Italy

May 2023 – Present Vice President of Computational Biology, Stealth Startup – Palo Alto, CA, USA

Awards

2007 “Sebastiano e Rita Raeli” prize for the best graduates of the University of Rome, Tor Vergata

2013 Human Frontier Science Program Postdoctoral Fellowship (refused)

2013 Life Sciences Research Foundation Postdoctoral Fellowship

Teaching 

2004 – 2008 - TA and member of the exam commission for the “Bioinformatics” course (4 cfu) LT in Molecular and Cellular Biology – University of Rome, Tor Vergata, Rome, Italy

2004 – 2008 - TA and member of the exam commission for the “Molecular Bioinformatics” course (4 cfu) LM in Molecular and Cellular Biology – University of Rome, Tor Vergata, Rome, Italy

2016 - TA for the BIO 150 “Human Behavioral Biology” course (prof. Robert Sapolsky) – Stanford University, Stanford, CA, USA

2023 – 2024 - “Gene Expression” course (6 cfu) LM in Molecular and Cellular Biology – University of Rome, Tor Vergata, Rome, Italy

2024 – 2025 - “Bioinformatics” course (6 cfu) LM in Bioinformatics – University of Rome, Tor Vergata, Rome, Italy

Scientific Interests

Development of experimental and computational methods for single-cell analysis

Integration and analysis of multi-omic data

Immunology

Cancer Immunotherapy




 





Research products

2108/361483 - 2024 - A meta-analysis approach to gene regulatory network inference identifies key regulators of cardiovascular diseases
Pepe, Gerardo; Appierdo, Romina; Ausiello, Gabriele; Helmer Citterich, Manuela; Gherardini, Pier Federico - 01 - Articolo su rivista
paper: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (Basel: MDPI Center) pp. - - issn: 1422-0067 - wos: WOS:001210099700001 (1) - scopus: 2-s2.0-85191386951 (1)

2108/377946 - 2024 - Circulating KRAS G12D but not G12V is associated with survival in metastatic pancreatic ductal adenocarcinoma
Gherardini, Pier Federico - 01 - Articolo su rivista
paper: NATURE COMMUNICATIONS (London: Nature Publishing Group-Springer Nature) pp. - - issn: 2041-1723 - wos: WOS:001270732400024 (0) - scopus: 2-s2.0-85198107944 (1)

2108/373494 - 2024 - Human lncRNAs harbor conserved modules embedded in different sequence contexts
Ballesio, Francesco; Pepe, Gerardo; Ausiello, Gabriele; Novelletto, Andrea; Helmer Citterich, Manuela; Gherardini, Pier Federico - 01 - Articolo su rivista
paper: NON-CODING RNA RESEARCH ([Amsterdam] : Production and hosting by Elsevier B.V. on behalf of KeAi Communications Co. Ltd.) pp. 1257-1270 - issn: 2468-0540 - wos: WOS:001273502800001 (0) - scopus: 2-s2.0-85196831816 (0)

2108/307779 - 2022 - Artificial intelligence methods enhance the discovery of RNA interactions
Pepe, Gerardo; Helmer Citterich, Manuela; Gherardini, Pier Federico - 01 - Articolo su rivista
paper: FRONTIERS IN MOLECULAR BIOSCIENCES (Lausanne : Frontiers Media S.A., 2014-) pp. - - issn: 2296-889X - wos: WOS:000875656500001 (3) - scopus: 2-s2.0-85140450709 (2)

2108/312074 - 2022 - Sotigalimab and/or nivolumab with chemotherapy in first-line metastatic pancreatic cancer: clinical and immunologic analyses from the randomized phase 2 PRINCE trial
Gherardini, Pier Federico - 01 - Articolo su rivista
paper: NATURE MEDICINE (New York, N.Y. : Nature America, Inc.) pp. 1167-1177 - issn: 1546-170X - wos: WOS:000805744500001 (146) - scopus: 2-s2.0-85131291377 (147)

2108/312444 - 2022 - Ipilimumab alone or in combination with nivolumab in patients with advanced melanoma who have progressed or relapsed on PD-1 blockade: clinical outcomes and translational biomarker analyses
Gherardini, Pier Federico - 01 - Articolo su rivista
paper: JOURNAL FOR IMMUNOTHERAPY OF CANCER ([London] : BioMed Central) pp. - - issn: 2051-1426 - wos: WOS:000747345500003 (27) - scopus: 2-s2.0-85123816141 (25)

2108/312077 - 2021 - CD40 agonistic monoclonal antibody APX005M (sotigalimab) and chemotherapy, with or without nivolumab, for the treatment of metastatic pancreatic adenocarcinoma: an open-label, multicentre, phase 1b study
Gherardini, Pier Federico - 01 - Articolo su rivista
paper: THE LANCET ONCOLOGY (The Lancet:6277 Sea Harbor:Orlando, FL 32887:(800)462-6198, EMAIL: uslancetcs@elsevier.com, INTERNET: http://www.thelancet.com, Fax: (407)363-1354) pp. 118-131 - issn: 1470-2045 - wos: WOS:000610553800054 (176) - scopus: 2-s2.0-85098529304 (179)

2108/312076 - 2021 - A "data sharing trust" model for rapid, collaborative science
Gherardini, Pier Federico - 01 - Articolo su rivista
paper: CELL (Cambridge Mass.: MIT, 1974-) pp. 566-570 - issn: 1097-4172 - wos: WOS:000629631400002 (4) - scopus: 2-s2.0-85100405503 (8)

2108/312078 - 2020 - Landscape of coordinated immune responses to H1N1 challenge in humans
Chen, Han; Gherardini, Pier Federico - 01 - Articolo su rivista
paper: THE JOURNAL OF CLINICAL INVESTIGATION (American Society for Clinical Investigation:PO Box 7226:Ann Arbor, MI 48107:(734)222-6050, EMAIL: rhickman@the-jci.org, INTERNET: http://www.jci.org, Fax: (734)222-6058) pp. 5800-5816 - issn: 0021-9738 - wos: WOS:000587413700022 (18) - scopus: 2-s2.0-85095461758 (19)

2108/312080 - 2019 - Multiplexed profiling of RNA and protein expression signatures in individual cells using flow or mass cytometry
Gherardini, Pier Federico - 01 - Articolo su rivista
paper: NATURE PROTOCOLS (London, UK : Nature Pub. Group, 2006-) pp. 901-920 - issn: 1750-2799 - wos: WOS:000459890700010 (26) - scopus: 2-s2.0-85061178423 (30)

2108/312079 - 2019 - Comprehensive Immune Monitoring of Clinical Trials to Advance Human Immunotherapy
Gherardini, Pier Federico - 01 - Articolo su rivista
paper: CELL REPORTS (Elsevier B.V. Cambridge MA: Cell Press) pp. 819-831.e4 - issn: 2211-1247 - wos: WOS:000475582000020 (72) - scopus: 2-s2.0-85068116065 (78)

2108/312082 - 2018 - Epigenomic-Guided Mass Cytometry Profiling Reveals Disease-Specific Features of Exhausted CD8 T Cells
Gherardini, Pier Federico - 01 - Articolo su rivista
paper: IMMUNITY (Cambridge Mass.: Cell Press) pp. 1029-1045.e5 - issn: 1097-4180 - wos: WOS:000432488600021 (211) - scopus: 2-s2.0-85046641108 (209)

2108/312261 - 2018 - GateFinder: projection-based gating strategy optimization for flow and mass cytometry
Gherardini, Pier Federico - 01 - Articolo su rivista
paper: BIOINFORMATICS ([Oxford] : Oxford University Press) pp. 4131-4133 - issn: 1367-4811 - wos: WOS:000453453300027 (14) - scopus: 2-s2.0-85057163364 (18)

2108/312295 - 2018 - High response rate to PD-1 blockade in desmoplastic melanomas
Gherardini, Pier Federico - 01 - Articolo su rivista
paper: NATURE ([London] : Nature Pub. Group) pp. 347-350 - issn: 1476-4687 - wos: WOS:000423475100053 (246) - scopus: 2-s2.0-85040827832 (261)

2108/312081 - 2018 - MetaCyto: A Tool for Automated Meta-analysis of Mass and Flow Cytometry Data
Gherardini, Pier Federico - 01 - Articolo su rivista
paper: CELL REPORTS (Elsevier B.V. Cambridge MA: Cell Press) pp. 1377-1388 - issn: 2211-1247 - wos: WOS:000440377500025 (34) - scopus: 2-s2.0-85050365233 (37)

2108/312297 - 2017 - Systemic immunity is required for effective cancer immunotherapy
Gherardini, Pier Federico - 01 - Articolo su rivista
paper: CELL (Cambridge Mass.: MIT, 1974-) pp. 487-502.e15 - issn: 1097-4172 - wos: WOS:000424595700001 (667) - scopus: 2-s2.0-85009756462 (675)

2108/234343 - 2016 - Deep Proteomics of Breast Cancer Cells Reveals that Metformin Rewires Signaling Networks Away from a Pro-growth State
Sacco, Francesca; Pirro', Stefano; Gherardini, Pier Federico; Castagnoli, Luisa; Cesareni, Giovanni - 01 - Articolo su rivista
paper: CELL SYSTEMS (Cambridge, MA : Cell Press ; Philadelphia, PA : Elsevier) pp. 159-171 - issn: 2405-4712 - wos: WOS:000394358800006 (65) - scopus: 2-s2.0-84959286939 (73)

2108/312339 - 2015 - Single-cell systems-level analysis of human Toll-like receptor activation defines a chemokine signature in patients with systemic lupus erythematosus
Gherardini, Pier Federico - 01 - Articolo su rivista
paper: THE JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY (St. Louis, MO : Elsevier) pp. 1326-1336 - issn: 1097-6825 - wos: WOS:000364787200023 (61) - scopus: 2-s2.0-84957447776 (65)

2108/302887 - 2015 - Erratum: AMBRA1 links autophagy to cell proliferation and tumorigenesis by promoting c-Myc dephosphorylation and degradation (Nature Cell Biology (2015) 17 (20-30))
Cianfanelli, Valentina; Fuoco, Claudia; Gherardini, Pier Federico; De Zio, Daniela; Antonioli, Manuela; D'orazio, Melania; Bordi, Matteo; Helmer Citterich, Manuela; Piacentini, Mauro; Di Bartolomeo, Sabrina; Cecconi, Francesco - 01 - Articolo su rivista
paper: NATURE CELL BIOLOGY (London : Macmillan Magazines Ltd., c1999- London : Nature Publishing Group) pp. 706-706 - issn: 1476-4679 - wos: WOS:000353771500018 (5) - scopus: 2-s2.0-84929469872 (28)

2108/312340 - 2015 - An interactive reference framework for modeling a dynamic immune system
Gherardini, Pier Federico - 01 - Articolo su rivista
paper: SCIENCE (New York, N.Y. : [s.n.] 1880-American Association for the Advancement of Science.) pp. 1259425- - issn: 1095-9203 - wos: WOS:000357664300034 (183) - scopus: 2-s2.0-84937604921 (194)

2108/107761 - 2015 - AMBRA1 links autophagy to cell proliferation and tumorigenesis by promoting c-Myc dephosphorylation and degradation
Fuoco, Claudia; Gherardini, Pier Federico; De Zio, Daniela; Nazio, Francesca; Antonioli, Manuela; D'orazio, Melania; Helmer Citterich, Manuela; Piacentini, Mauro; Di Bartolomeo, Sabrina; Cecconi, Francesco - 01 - Articolo su rivista
paper: NATURE CELL BIOLOGY (Nature America Incorporated:345 Park Avenue South, 6th Floor:New York, NY 10010:(888)331-6288, EMAIL: institutions@natureny.com, INTERNET: http://www.nature.com, Fax: (212)689-9108) pp. 20-30 - issn: 1465-7392 - wos: WOS:000346823900005 (182) - scopus: 2-s2.0-84926145894 (184)

2108/86849 - 2014 - Regulation dynamics of Leishmania differentiation: deconvoluting signals and identifying phosphorylation trends
Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
paper: MOLECULAR & CELLULAR PROTEOMICS (AMERICAN SOCIETY FOR BIOCHEMISTRY AND MOLECULAR BIOLOGY INC, 9650 ROCKVILLE PIKE, BETHESDA, USA, MD, 20814-3996) pp. - - issn: 1535-9476 - wos: WOS:000339251300011 (59) - scopus: 2-s2.0-84904103761 (60)

2108/87935 - 2014 - A proteome-wide Domain-centric Perspective on Protein Phosphorylation
Ausiello, Gabriele; Helmer Citterich, Manuela; Gherardini, Pier Federico - 01 - Articolo su rivista
paper: MOLECULAR & CELLULAR PROTEOMICS (AMERICAN SOCIETY FOR BIOCHEMISTRY AND MOLECULAR BIOLOGY INC, 9650 ROCKVILLE PIKE, BETHESDA, USA, MD, 20814-3996) pp. - - issn: 1535-9476 - wos: WOS:000341785800003 (4) - scopus: 2-s2.0-84907192049 (4)

2108/74775 - 2013 - Exploring the diversity of SPRY/B30.2-mediated interactions
Gherardini, Pier Federico; Helmer Citterich, Manuela; Cesareni, Giovanni - 01 - Articolo su rivista
paper: TRENDS IN BIOCHEMICAL SCIENCES (Elsevier Trends Journals:An Imprint of Elsevier Science Limited, The Boulevard, Langford Lane, Kidlington, Oxford 0X5 1GB United Kingdom:011 44 1865 843000, 011 44 1865 843699, Fax: 011 44 1865 843010) pp. 38-46 - issn: 0968-0004 - wos: WOS:000314143700006 (71) - scopus: 2-s2.0-84871474752 (56)

2108/74772 - 2013 - Enrichment of Leishmania donovani ATP-binding proteins using a staurosporine capture compound
Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
paper: JOURNAL OF PROTEOMICS () pp. - - issn: 1874-3919 - wos: WOS:000321403500008 (3) - scopus: 2-s2.0-84878906443 (4)

2108/78693 - 2013 - Alternative splicing tends to avoid partial removals of protein-protein interaction sites
Gherardini, Pier Federico; Scalia Tomba, Gianpaolo; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
paper: BMC GENOMICS (London: BioMed Central, 2000-) pp. 379-379 - issn: 1471-2164 - wos: WOS:000321387000001 (3) - scopus: 2-s2.0-84878657158 (4)

2108/74769 - 2013 - Phosphoproteomic analysis of differentiating Leishmania parasites reveals unique stage-specific phosphorylation motif
Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
paper: JOURNAL OF PROTEOME RESEARCH (Washington, D.C. : American Chemical Society, c2002-) pp. - - issn: 1535-3893 - wos: WOS:000321605700031 (53) - scopus: 2-s2.0-84879897507 (53)

2108/74771 - 2013 - Experimental and computational methods for the analysis and modeling of signaling networks
Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
paper: NEW BIOTECHNOLOGY (Amsterdam : Elsevier Life Science) pp. 327-332 - issn: 1871-6784 - wos: WOS:000317240000012 (3) - scopus: 2-s2.0-84878107994 (3)

2108/73447 - 2012 - What have proteomics taught us about Leishmania development?
Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
paper: PARASITOLOGY (London: Cambridge University Press, 1908-) pp. 1146-1157 - issn: 0031-1820 - wos: WOS:000308382200005 (29) - scopus: 2-s2.0-84864999160 (28)

2108/74627 - 2012 - Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities
Gherardini, Pier Federico; Helmer Citterich, Manuela; Ausiello, Gabriele - 01 - Articolo su rivista
paper: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. - - issn: 1471-2105 - wos: WOS:000303936400018 (16) - scopus: 2-s2.0-84864936114 (16)

2108/69847 - 2012 - B-Pred, a structure based B-cell epitopes prediction server
Giaco', Luciano; Amicosante, Massimo; Fraziano, Maurizio; Gherardini, Pier Federico; Ausiello, Gabriele; Helmer Citterich, Manuela; Colizzi, Vittorio; Cabibbo, Andrea - 01 - Articolo su rivista
paper: ADVANCES AND APPLICATIONS IN BIOINFORMATICS AND CHEMISTRY ([Auckland, N.Z. : Dove Medical Press]) pp. 11-21 - issn: 1178-6949 - wos: (0) - scopus: 2-s2.0-84878890474 (16)

2108/74770 - 2012 - Identification of nucleotide-binding sites in protein structures: a novel approach based on nucleotide modularity
Gherardini, Pier Federico; Helmer Citterich, Manuela; Ausiello, Gabriele - 01 - Articolo su rivista
paper: PLOS ONE (San Francisco, CA : Public Library of Science) pp. e50240-e50240 - issn: 1932-6203 - wos: WOS:000311885800056 (6) - scopus: 2-s2.0-84870276089 (6)

2108/77892 - 2012 - Mapping the human phosphatome on growth pathways
Sacco, Francesca; Gherardini, Pier Federico; Paoluzi, Serena; Helmer Citterich, Manuela; Ragnini, Antonella; Castagnoli, Luisa; Cesareni, Giovanni - 01 - Articolo su rivista
paper: MOLECULAR SYSTEMS BIOLOGY (London : Nature Pub. Group) pp. 603-603 - issn: 1744-4292 - wos: WOS:000308316400003 (20) - scopus: 2-s2.0-84868282067 (19)

2108/42697 - 2011 - PhosTryp: a phosphorylation sites predictor specific for parasitic protozoa of the family trypanosomatidae
Gherardini, Pier Federico; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
paper: BMC GENOMICS (London: BioMed Central, 2000-) pp. 614- - issn: 1471-2164 - wos: WOS:000300735700001 (18) - scopus: 2-s2.0-83655180753 (19)

2108/15203 - 2011 - Adaptation of a 2D in-gel kinase assay to trace phosphotransferase activities in the human pathogen Leishmania donovani
Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
paper: JOURNAL OF PROTEOMICS () pp. - - issn: 1874-3919 - wos: WOS:000295149000014 (7) - scopus: 2-s2.0-80051673320 (7)

2108/15040 - 2011 - Phosfinder: a web server for the identification of phosphate-binding sites on protein structures
Gherardini, Pier Federico; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. - - issn: 0305-1048 - wos: WOS:000292325300045 (12) - scopus: 2-s2.0-79959938469 (12)

2108/14876 - 2011 - Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites
Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. D268-D271 - issn: 0305-1048 - wos: WOS:000285831700045 (37) - scopus: 2-s2.0-78651323535 (39)

2108/15046 - 2011 - Phosphate binding sites identification in protein structures
Gherardini, Pier Federico; Helmer Citterich, Manuela; Ausiello, Gabriele - 01 - Articolo su rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. 1231-42- - issn: 0305-1048 - wos: WOS:000288019400013 (14) - scopus: 2-s2.0-79952351456 (15)

2108/312337 - 2010 - Identification from chest x-rays: reliability of bone density patterns of the humerus
Gherardini, Pier Federico; Arcudi, Giovanni - 01 - Articolo su rivista
paper: JOURNAL OF FORENSIC SCIENCES (West Conshocken, PA : ASTM) pp. 478-481 - issn: 1556-4029 - wos: WOS:000275098700028 (5) - scopus: 2-s2.0-77649258479 (6)

2108/15086 - 2010 - Superpose3D: a local structural comparison program that allows for user-defined structure representations
Gherardini, Pier Federico; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
paper: PLOS ONE (San Francisco, CA : Public Library of Science) pp. e11988- - issn: 1932-6203 - wos: WOS:000280605400021 (14) - scopus: 2-s2.0-77957760751 (12)

2108/14880 - 2010 - Identification of Leishmania-specific protein phosphorylation sites by LC-ESI-MS/MS and comparative genomics analyses
Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
paper: PROTEOMICS (Wiley-VCH Verlag GmBH:PO Box 101161, D 69451 Weinheim Germany:011 49 6201 606147, EMAIL: service@wiley-vch.de, INTERNET: http://www.wiley-vch.de, Fax: 011 49 6201 606328) pp. 3868-3883 - issn: 1615-9853 - wos: WOS:000284045300009 (30) - scopus: 2-s2.0-78049391406 (38)

2108/15047 - 2010 - Modular architecture of nucleotide-binding pockets
Gherardini, Pier Federico; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. 3809-3816 - issn: 0305-1048 - wos: WOS:000279188800035 (25) - scopus: 2-s2.0-77954364272 (24)

2108/15049 - 2009 - Structural motifs recurring in different folds recognize the same ligand fragments
Ausiello, Gabriele; Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
paper: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. 182- - issn: 1471-2105 - wos: WOS:000267597100001 (11) - scopus: 2-s2.0-67649891099 (12)

2108/15192 - 2008 - Structure-based function prediction: approaches and applications
Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
paper: BRIEFINGS IN FUNCTIONAL GENOMICS & PROTEOMICS (-London : Henry Stewart, 2002-2009. -Oxford : Oxford Journals) pp. 291-302 - issn: 1473-9550 - wos: (0) - scopus: 2-s2.0-53249156104 (63)

2108/15050 - 2008 - FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures
Ausiello, Gabriele; Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
paper: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. S2- - issn: 1471-2105 - wos: WOS:000259022900002 (27) - scopus: 2-s2.0-43349087464 (30)

2108/15194 - 2007 - 3dLOGO: a web server for the identification, analysis and use of conserved protein substructures
Gherardini, Pier Federico; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. W416-W419 - issn: 0305-1048 - wos: WOS:000255311500078 (4) - scopus: 2-s2.0-34547561586 (6)

2108/15215 - 2007 - False occurrences of functional motifs in protein sequences highlight evolutionary constraints
Gherardini, Pier Federico; Ausiello, Gabriele; Scalia Tomba, Gianpaolo; Helmer Citterich, Manuela - 01 - Articolo su rivista
paper: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. 68- - issn: 1471-2105 - wos: WOS:000244856400001 (7) - scopus: 2-s2.0-33947389235 (9)

2108/14722 - 2007 - Phospho3D: a database of three-dimensional structures of protein phosphorylation sites
Ausiello, Gabriele; Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. D229-D231 - issn: 0305-1048 - wos: WOS:000243494600047 (40) - scopus: 2-s2.0-33846097128 (41)

2108/15200 - 2007 - Convergent evolution of enzyme active sites is not a rare phenomenon
Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
paper: JOURNAL OF MOLECULAR BIOLOGY (-LONDON, ENGLAND: ACADEMIC PRESS LTD ELSEVIER SCIENCE LTD, -London; New York: Academic Press.) pp. 817-845 - issn: 0022-2836 - wos: WOS:000249494800020 (89) - scopus: 2-s2.0-34548241399 (94)

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