2108/361483 - 2024 -
A meta-analysis approach to gene regulatory network inference identifies key regulators of cardiovascular diseases Pepe, Gerardo; Appierdo, Romina; Ausiello, Gabriele; Helmer Citterich, Manuela; Gherardini, Pier Federico - 01 - Articolo su rivista
rivista: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (Basel: MDPI Center) pp. - - issn: 1422-0067 - wos: WOS:001210099700001 (1) - scopus: 2-s2.0-85191386951 (1)
2108/373494 - 2024 -
Human lncRNAs harbor conserved modules embedded in different sequence contexts Ballesio, Francesco; Pepe, Gerardo; Ausiello, Gabriele; Novelletto, Andrea; Helmer Citterich, Manuela; Gherardini, Pier Federico - 01 - Articolo su rivista
rivista: NON-CODING RNA RESEARCH ([Amsterdam] : Production and hosting by Elsevier B.V. on behalf of KeAi Communications Co. Ltd.) pp. 1257-1270 - issn: 2468-0540 - wos: WOS:001273502800001 (0) - scopus: 2-s2.0-85196831816 (0)
2108/344683 - 2024 -
NRF2 connects Src tyrosine kinase to ferroptosis resistance in glioblastoma Cirotti, Claudia; Taddei, Irene; Contadini, Claudia; Di Girolamo, Claudia; Pepe, Gerardo; De Bardi, Marco; Helmer Citterich, Manuela; Barila', Daniela - 01 - Articolo su rivista
rivista: LIFE SCIENCE ALLIANCE ([Woodbury NY]: Life Science Alliance LLC, [2018]-) pp. - - issn: 2575-1077 - wos: WOS:001112691200011 (4) - scopus: 2-s2.0-85175218482 (4)
2108/357743 - 2024 -
Unveiling the signaling network of FLT3-ITD AML improves drug sensitivity prediction Latini, Sara; Venafra, Veronica; Massacci, Giorgia; Bica, Valeria; Graziosi, Simone; Pugliese, Giusj Monia; Iannuccelli, Marta; Pepe, Gerardo; Helmer Citterich, Manuela; Perfetto, Livia; Sacco, Francesca - 01 - Articolo su rivista
rivista: ELIFE (Cambridge: eLife Sciences Publications) pp. - - issn: 2050-084X - wos: WOS:001196100200001 (0) - scopus: (0)
2108/344663 - 2023 -
Exploring the landscape of tools and resources for the analysis of long non-coding RNAs Pepe, Gerardo; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (Göteborg : Chalmers University of Technology, 2011-) pp. 4706-4716 - issn: 2001-0370 - wos: WOS:001147175300001 (2) - scopus: 2-s2.0-85173141032 (2)
2108/324227 - 2023 -
Looking for plant microRNAs in human blood samples: bioinformatics evidence and perspectives Olmi, Lorenzo; Pepe, Gerardo; Helmer Citterich, Manuela; Canini, Antonella; Gismondi, Angelo - 01 - Articolo su rivista
rivista: PLANT FOODS FOR HUMAN NUTRITION (Dordrecht : Kluwer) pp. 399-406 - issn: 1573-9104 - wos: WOS:000999249900001 (6) - scopus: 2-s2.0-85160762966 (8)
2108/344664 - 2023 -
Inhibition of exosome biogenesis affects cell motility in heterogeneous sub-populations of paediatric-type diffuse high-grade gliomas Petrilli, Lucia Lisa; Pepe, Gerardo; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: CELL & BIOSCIENCE (London : BioMed Central) pp. - - issn: 2045-3701 - wos: WOS:001101609500001 (1) - scopus: 2-s2.0-85176455906 (1)
2108/380523 - 2023 -
Clinical and functional characterization of COL2A1 p.Gly444Ser variant: From a fetal phenotype to a previously undisclosed postnatal phenotype Marchionni, Enrica; D'apice, Maria Rosaria; Lupo, Viviana; Pepe, Gerardo; Helmer Citterich, Manuela; Campione, Elena; Spitalieri, Paola; Pucci, Noemi; Picchi, Eliseo; Garaci, Francesco Giuseppe; Novelli, Giuseppe - 01 - Articolo su rivista
rivista: BONE REPORTS (New York : Elsevier) pp. 101728- - issn: 2352-1872 - wos: WOS:001165213700001 (0) - scopus: 2-s2.0-85178200947 (0)
2108/354164 - 2023 -
Epigenetic priming of an epithelial enhancer by p63 and CTCF controls expression of a skin-restricted gene XP33 Smirnov, Artem; Lena, Anna Maria; Tosetti, Giulia; Cappello, Angela; Helmer Citterich, Manuela; Candi, Eleonora - 01 - Articolo su rivista
rivista: CELL DEATH DISCOVERY ([London]: Nature Publishing Group, 2015-) pp. 446- - issn: 2058-7716 - wos: WOS:001117951400001 (2) - scopus: 2-s2.0-85178921071 (2)
2108/292081 - 2022 -
Evaluation of potential miRNA sponge effects of SARS genomes in human Pepe, Gerardo; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NON-CODING RNA RESEARCH ([Amsterdam] : Production and hosting by Elsevier B.V. on behalf of KeAi Communications Co. Ltd.) pp. 48-53 - issn: 2468-0540 - wos: WOS:000760777100007 (9) - scopus: 2-s2.0-85124484510 (9)
2108/293527 - 2022 -
PDBe-KB: collaboratively defining the biological context of structural data Helmer Citterich, Manuela; Pepe, Gerardo - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford : Oxford University Press) pp. D534-D542 - issn: 1362-4962 - wos: WOS:000743496700065 (46) - scopus: 2-s2.0-85125170185 (49)
2108/296268 - 2022 -
Conserved exchange of paralog proteins during neuronal differentiation Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: LIFE SCIENCE ALLIANCE ([Woodbury NY]: Life Science Alliance LLC, [2018]-) pp. e202201397- - issn: 2575-1077 - wos: WOS:000769773000001 (0) - scopus: 2-s2.0-85126407593 (0)
2108/307779 - 2022 -
Artificial intelligence methods enhance the discovery of RNA interactions Pepe, Gerardo; Helmer Citterich, Manuela; Gherardini, Pier Federico - 01 - Articolo su rivista
rivista: FRONTIERS IN MOLECULAR BIOSCIENCES (Lausanne : Frontiers Media S.A., 2014-) pp. - - issn: 2296-889X - wos: WOS:000875656500001 (3) - scopus: 2-s2.0-85140450709 (3)
2108/307757 - 2022 -
Dissecting the Genome for Drug Response Prediction Pepe, Gerardo; Helmer Citterich, Manuela - 03 - Contributo in libro
libro: Data mining techniques for the life technologies - ()
2108/307756 - 2022 -
Variation in the co-expression profile highlights a loss of miRNA-mRNA regulation in multiple cancer types Pepe, Gerardo; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NON-CODING RNA RESEARCH ([Amsterdam] : Production and hosting by Elsevier B.V. on behalf of KeAi Communications Co. Ltd.) pp. 98-105 - issn: 2468-0540 - wos: WOS:000789187900006 (2) - scopus: 2-s2.0-85126990330 (2)
2108/307758 - 2022 -
Type I IFNs promote cancer cell stemness by triggering the epigenetic regulator KDM1B Pietrosanto, Marco; Helmer Citterich, Manuela; Vitale, Sara; Vitale, Ilio - 01 - Articolo su rivista
rivista: NATURE IMMUNOLOGY (New York NY: Nature Pub. Group, ©2000-) pp. 1379-1392 - issn: 1529-2916 - wos: WOS:000844434100003 (59) - scopus: 2-s2.0-85136883660 (57)
2108/276236 - 2021 -
Variants in mhy7 gene cause arrhythmogenic cardiomyopathy Ferradini, Valentina; Lanzillo, Chiara; Novelli, Giuseppe; Helmer Citterich, Manuela; Sangiuolo, Federica Carla - 01 - Articolo su rivista
rivista: GENES (Basel : Molecular Diversity Preservation International) pp. - - issn: 2073-4425 - wos: WOS:000666548100001 (5) - scopus: 2-s2.0-85107115523 (5)
2108/292027 - 2021 -
Motif Discovery from CLIP Experiments Pietrosanto, Marco; Ausiello, Gabriele; Helmer Citterich, Manuela - 03 - Contributo in libro
libro: RNA Bioinformatics - (978-1-0716-1307-8)
2108/291978 - 2021 -
Relative Information Gain: Shannon entropy-based measure of the relative structural conservation in RNA alignments Pietrosanto, Marco; Adinolfi, Marta; Ausiello, Gabriele; Vitale, Ilio; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NAR GENOMICS AND BIOINFORMATICS (Oxford: Oxford University Press, 2019-) pp. lqab007- - issn: 2631-9268 - wos: WOS:000698594000016 (4) - scopus: 2-s2.0-85110299502 (3)
2108/292031 - 2021 -
A eutherian-specific microRNA controls the translation of Satb2 in a model of cortical differentiation Pietrosanto, Marco; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: STEM CELL REPORTS (Amsterdam : Elsevier) pp. 1496-1509 - issn: 2213-6711 - wos: WOS:000659201500012 (8) - scopus: 2-s2.0-85107153422 (8)
2108/292033 - 2021 -
BRIO: a web server for RNA sequence and structure motif scan Pepe, Gerardo; Adinolfi, Marta; Pietrosanto, Marco; Vitale, Ilio; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford : Oxford University Press) pp. W67-W71 - issn: 1362-4962 - wos: WOS:000672775800010 (3) - scopus: 2-s2.0-85110354262 (10)
2108/292035 - 2021 -
COTAN: scRNA-seq data analysis based on gene co-expression Pietrosanto, Marco; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NAR GENOMICS AND BIOINFORMATICS (Oxford: Oxford University Press, 2019-) pp. lqab072- - issn: 2631-9268 - wos: WOS:000745279200016 (8) - scopus: 2-s2.0-85117107330 (9)
2108/292037 - 2021 -
Early life adversity affecting the attachment bond alters ventral tegmental area transcriptomic patterning and behavior almost exclusively in female mice Pietrosanto, Marco; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NEUROBIOLOGY OF STRESS (New York : Elsevier Inc.) pp. 100406- - issn: 2352-2895 - wos: WOS:000709723500003 (5) - scopus: 2-s2.0-85119379843 (6)
2108/252999 - 2020 -
WWP1 germline variants are associated with normocephalic autism spectrum disorder Novelli, Giuseppe; Borgiani, Paola; Biancolella, Michela; Pietrosanto, Marco; Helmer Citterich, Manuela; Giardina, Emiliano - 01 - Articolo su rivista
rivista: CELL DEATH & DISEASE (Nature Group) pp. 529- - issn: 2041-4889 - wos: WOS:000551504300001 (5) - scopus: 2-s2.0-85088388768 (5)
2108/252997 - 2020 -
A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community) Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: F1000RESEARCH (London : F1000Research) pp. 278- - issn: 2046-1402 - wos: (0) - scopus: 2-s2.0-85086864843 (9)
2108/230386 - 2020 -
PDBe-KB: a community-driven resource for structural and functional annotations Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford : Oxford University Press) pp. D344-D353 - issn: 1362-4962 - wos: WOS:000525956700048 (70) - scopus: 2-s2.0-85075918849 (73)
2108/238650 - 2020 -
RISC RNA Sequencing in the Dorsal Raphè Reveals microRNAs Regulatory Activities Associated With Behavioral and Functional Adaptations to Chronic Stress Pietrosanto, Marco; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BRAIN RESEARCH (Amsterdam; Lausanne; New York; Oxford; Shannon; Tokyo: Elsevier) pp. - - issn: 0006-8993 - wos: WOS:000524457100010 (4) - scopus: 2-s2.0-85081672685 (4)
2108/254254 - 2020 -
COVID-19 and genetic variants of protein involved in the SARS-CoV-2 entry into the host cells Borgiani, Paola; Dauri, Mario; Andreoni, Massimo; Rogliani, Paola; Bernardini, Sergio; Helmer Citterich, Manuela; Biancolella, Michela; Novelli, Giuseppe - 01 - Articolo su rivista
rivista: GENES (Basel : Molecular Diversity Preservation International) pp. - - issn: 2073-4425 - wos: WOS:000581402000001 (82) - scopus: 2-s2.0-85090107885 (89)
2108/214829 - 2019 -
Discovering sequence and structure landscapes in RNA interaction motifs Adinolfi, Marta; Pietrosanto, Marco; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford : Oxford University Press) pp. 4958-4969 - issn: 1362-4962 - wos: WOS:000471248400011 (16) - scopus: 2-s2.0-85067196016 (15)
2108/230433 - 2019 -
Modeling cancer drug response through drug-specific informative genes Pepe, Gerardo; Pietrosanto, Marco; Palmeri, Antonio; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: SCIENTIFIC REPORTS (London: Springer Nature
London: Nature Publishing Group) pp. 15222- - issn: 2045-2322 - wos: WOS:000491859500012 (42) - scopus: 2-s2.0-85074078472 (45)
2108/230361 - 2019 -
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen Calderone, Alberto; Castagnoli, Luisa; Cesareni, Giovanni; Helmer Citterich, Manuela; Palmeri, Antonio; Perfetto, Livia; Pirro', Stefano - 01 - Articolo su rivista
rivista: NATURE COMMUNICATIONS (London: Nature Publishing Group-Springer Nature) pp. 2674- - issn: 2041-1723 - wos: WOS:000471758500010 (196) - scopus: 2-s2.0-85067453487 (216)
Helmer Citterich, Manuela - 04 - Monografia
2108/203278 - 2018 -
Kinome-wide identification of phosphorylation networks in Eukaryotic proteomes Parca, Luca; Ariano, Bruno; Cabibbo, Andrea; Palmeri, Antonio; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BIOINFORMATICS (-Oxford : Oxford University Press, 1998-) pp. - - issn: 1367-4803 - wos: WOS:000459315700003 (7) - scopus: 2-s2.0-85061118460 (7)
2108/203280 - 2018 -
BEAM web server: A tool for structural RNA motif discovery Pietrosanto, Marco; Adinolfi, Marta; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BIOINFORMATICS (-Oxford : Oxford University Press, 1998-) pp. 1058-1060 - issn: 1367-4803 - wos: WOS:000427887200028 (8) - scopus: 2-s2.0-85044337532 (10)
2108/163054 - 2016 -
Next generation sequencing and linkage analysis for the molecular diagnosis of a novel overlapping syndrome characterized by hypertrophic cardiomyopathy and typical electrical instability of brugada syndrome Giardina, Emiliano; Helmer Citterich, Manuela; Romeo, Francesco; Novelli, Giuseppe; Sangiuolo, Federica Carla - 01 - Articolo su rivista
rivista: CIRCULATION JOURNAL (Tokyo: Japanese Circulation Society
Kyoto,Japan: Japanese Circulation Society-Nihon Junkanki Gakkai) pp. 938-949 - issn: 1346-9843 - wos: WOS:000373401900025 (19) - scopus: 2-s2.0-84961659733 (21)
2108/159874 - 2016 -
Structural Defects of Laminin β3 N-terminus Underlie Junctional Epidermolysis Bullosa with Altered Granulation Tissue Response Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: ACTA DERMATO-VENEREOLOGICA (ATTUALE:
Taylor & Francis Limited:Rankine Road, Basingstoke RG24 8PR United Kingdom:011 44 1256 813035, EMAIL: madeline.sims@tandf.co.uk, info@tandf.co.uk, INTERNET: http://www.tandf.co.uk, Fax: 011 44 1256 330245
PRECEDENTE:
Stockholm; Oslo: Scandinavian University Press Scandinavian University Press.) pp. 954-958 - issn: 0001-5555 - wos: WOS:000386473400017 (6) - scopus: 2-s2.0-84992702758 (6)
2108/163606 - 2016 -
A novel method for the identification of conserved structural patterns in RNA: From small scale to high-throughput applications Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. 8600-8609 - issn: 0305-1048 - wos: WOS:000386945000011 (18) - scopus: 2-s2.0-84992397328 (20)
2108/159876 - 2016 -
c-MYC inhibition impairs hypoxia response in glioblastoma multiforme Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: ONCOTARGET (Albany, N.Y. : Impact Journals) pp. 33257-33271 - issn: 1949-2553 - wos: WOS:000377748500130 (27) - scopus: 2-s2.0-84973524706 (27)
2108/159878 - 2016 -
Genome-wide methylation analysis demonstrates that 5-aza-2-deoxycytidine treatment does not cause random DNA demethylation in fragile X syndrome cells Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: EPIGENETICS & CHROMATIN (London : BioMed Central) pp. 12- - issn: 1756-8935 - wos: WOS:000372825700001 (25) - scopus: 2-s2.0-84962323308 (28)
2108/123010 - 2016 -
The human rs1050286 polymorphism alters LOX-1 expression through modifying miR-24 binding Pucci, Sabina; Caporossi, Daniela; Helmer Citterich, Manuela; Novelli, Giuseppe; Amati, Francesca - 01 - Articolo su rivista
rivista: JOURNAL OF CELLULAR AND MOLECULAR MEDICINE (Bucharest : University Press "Carol Davila"
Bucharest: Foundation for Cellular and Molecular Medicine, 2000-) pp. 181-187 - issn: 1582-4934 - wos: WOS:000368273700018 (19) - scopus: 2-s2.0-84956591362 (19)
2108/114405 - 2015 -
Revealing protein-lncRNA interaction Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BRIEFINGS IN BIOINFORMATICS (-Oxford : Oxford Journals
-London : Henry Stewart, 2000-) pp. - - issn: 1467-5463 - wos: WOS:000369219800011 (532) - scopus: 2-s2.0-84960088094 (527)
2108/114407 - 2015 -
Preface: BITS2014, the annual meeting of the Italian Society of Bioinformatics Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. S1- - issn: 1471-2105 - wos: WOS:000367875300001 (0) - scopus: 2-s2.0-84943166246 (0)
2108/107760 - 2015 -
A simple protocol for the inference of RNA global pairwise alignments Helmer Citterich, Manuela - 03 - Contributo in libro
libro: RNA Bioinformatics - ()
2108/124592 - 2015 -
Tools and data services registry: a community effort to document bioinformatics resources Cesareni, Giovanni; Helmer Citterich, Manuela; Licata, Luana - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. gkv1116- - issn: 0305-1048 - wos: WOS:000371261700005 (82) - scopus: 2-s2.0-84976872277 (109)
2108/107761 - 2015 -
AMBRA1 links autophagy to cell proliferation and tumorigenesis by promoting c-Myc dephosphorylation and degradation Fuoco, Claudia; Gherardini, Pier Federico; De Zio, Daniela; Nazio, Francesca; Antonioli, Manuela; D'orazio, Melania; Helmer Citterich, Manuela; Piacentini, Mauro; Di Bartolomeo, Sabrina; Cecconi, Francesco - 01 - Articolo su rivista
rivista: NATURE CELL BIOLOGY (Nature America Incorporated:345 Park Avenue South, 6th Floor:New York, NY 10010:(888)331-6288, EMAIL: institutions@natureny.com, INTERNET: http://www.nature.com, Fax: (212)689-9108) pp. 20-30 - issn: 1465-7392 - wos: WOS:000346823900005 (182) - scopus: 2-s2.0-84926145894 (184)
2108/112891 - 2015 -
Web-Beagle: a web server for the alignment of RNA secondary structures Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. 493-497 - issn: 0305-1048 - wos: WOS:000359772700078 (26) - scopus: 2-s2.0-84979859183 (26)
2108/116483 - 2015 -
Kinome-wide Decoding of Network-Attacking Mutations Rewiring Cancer Signaling Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: CELL (Cell Press:1100 Massachusetts Avenue:Cambridge, MA 02138:(617)661-7057, EMAIL: subs@cell.com, INTERNET: http://www.cellpress.com, Fax: (617)397-2850) pp. 202-217 - issn: 0092-8674 - wos: WOS:000361846500032 (120) - scopus: 2-s2.0-84945921294 (128)
2108/302887 - 2015 -
Erratum: AMBRA1 links autophagy to cell proliferation and tumorigenesis by promoting c-Myc dephosphorylation and degradation (Nature Cell Biology (2015) 17 (20-30)) Cianfanelli, Valentina; Fuoco, Claudia; Gherardini, Pier Federico; De Zio, Daniela; Antonioli, Manuela; D'orazio, Melania; Bordi, Matteo; Helmer Citterich, Manuela; Piacentini, Mauro; Di Bartolomeo, Sabrina; Cecconi, Francesco - 01 - Articolo su rivista
rivista: NATURE CELL BIOLOGY (London : Macmillan Magazines Ltd., c1999-
London : Nature Publishing Group) pp. 706-706 - issn: 1476-4679 - wos: WOS:000353771500018 (5) - scopus: 2-s2.0-84929469872 (28)
2108/87935 - 2014 -
A proteome-wide Domain-centric Perspective on Protein Phosphorylation Ausiello, Gabriele; Helmer Citterich, Manuela; Gherardini, Pier Federico - 01 - Articolo su rivista
rivista: MOLECULAR & CELLULAR PROTEOMICS (AMERICAN SOCIETY FOR BIOCHEMISTRY AND MOLECULAR BIOLOGY INC, 9650 ROCKVILLE PIKE, BETHESDA, USA, MD, 20814-3996) pp. - - issn: 1535-9476 - wos: WOS:000341785800003 (4) - scopus: 2-s2.0-84907192049 (4)
2108/86848 - 2014 -
A novel approach to represent and compare RNA secondary structures Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. - - issn: 0305-1048 - wos: WOS:000338768100011 (36) - scopus: 2-s2.0-84903148507 (39)
2108/87934 - 2014 -
Computational methods for analysis and inference of kinase/inhibitor relationships Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: FRONTIERS IN GENETICS (Lausanne : Frontiers Research Foundation, 2010-) pp. 196-196 - issn: 1664-8021 - wos: WOS:000347091300001 (15) - scopus: 2-s2.0-84906247317 (16)
2108/100014 - 2014 -
Exploiting holistic approaches to model specificity in protein phosphorylation Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: FRONTIERS IN GENETICS (Lausanne : Frontiers Research Foundation, 2010-) pp. 315-315 - issn: 1664-8021 - wos: WOS:000347678700001 (11) - scopus: 2-s2.0-84917728240 (13)
2108/86849 - 2014 -
Regulation dynamics of Leishmania differentiation: deconvoluting signals and identifying phosphorylation trends Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: MOLECULAR & CELLULAR PROTEOMICS (AMERICAN SOCIETY FOR BIOCHEMISTRY AND MOLECULAR BIOLOGY INC, 9650 ROCKVILLE PIKE, BETHESDA, USA, MD, 20814-3996) pp. - - issn: 1535-9476 - wos: WOS:000339251300011 (59) - scopus: 2-s2.0-84904103761 (59)
2108/79054 - 2013 -
Role of CTCF protein in regulating FMR1 locus transcription Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: PLOS GENETICS (San Francisco, CA : Public Library of Science, c2005-) pp. e1003601-e1003601 - issn: 1553-7390 - wos: WOS:000322321100011 (36) - scopus: 2-s2.0-84880799926 (38)
2108/74773 - 2013 -
Peamaclein - a new peach allergenic protein: similarities, differences and misleading features compared to Pru p 3 Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: CLINICAL AND EXPERIMENTAL ALLERGY (Oxford: Blackwell Scientific, 1989-) pp. 128-140 - issn: 0954-7894 - wos: WOS:000312884700014 (80) - scopus: 2-s2.0-84871693164 (88)
2108/74774 - 2013 -
Nucleos: a web server for the identification of nucleotide-binding sites in protein structures Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. - - issn: 0305-1048 - wos: WOS:000323603200044 (7) - scopus: 2-s2.0-84883569138 (8)
2108/74769 - 2013 -
Phosphoproteomic analysis of differentiating Leishmania parasites reveals unique stage-specific phosphorylation motif Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: JOURNAL OF PROTEOME RESEARCH (Washington, D.C. : American Chemical Society, c2002-) pp. - - issn: 1535-3893 - wos: WOS:000321605700031 (53) - scopus: 2-s2.0-84879897507 (53)
2108/74775 - 2013 -
Exploring the diversity of SPRY/B30.2-mediated interactions Gherardini, Pier Federico; Helmer Citterich, Manuela; Cesareni, Giovanni - 01 - Articolo su rivista
rivista: TRENDS IN BIOCHEMICAL SCIENCES (Elsevier Trends Journals:An Imprint of Elsevier Science Limited, The Boulevard, Langford Lane, Kidlington, Oxford 0X5 1GB United Kingdom:011 44 1865 843000, 011 44 1865 843699, Fax: 011 44 1865 843010) pp. 38-46 - issn: 0968-0004 - wos: WOS:000314143700006 (71) - scopus: 2-s2.0-84871474752 (56)
2108/74772 - 2013 -
Enrichment of Leishmania donovani ATP-binding proteins using a staurosporine capture compound Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: JOURNAL OF PROTEOMICS () pp. - - issn: 1874-3919 - wos: WOS:000321403500008 (3) - scopus: 2-s2.0-84878906443 (4)
2108/77340 - 2013 -
Bioinformatics in Italy: BITS 2012, the ninth annual meeting of the Italian Society of Bioinformatics Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. S1-S1 - issn: 1471-2105 - wos: WOS:000318869400001 (1) - scopus: 2-s2.0-84887200027 (1)
2108/78693 - 2013 -
Alternative splicing tends to avoid partial removals of protein-protein interaction sites Gherardini, Pier Federico; Scalia Tomba, Gianpaolo; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC GENOMICS (London: BioMed Central, 2000-) pp. 379-379 - issn: 1471-2164 - wos: WOS:000321387000001 (3) - scopus: 2-s2.0-84878657158 (4)
2108/79258 - 2013 -
DBATE: database of alternative transcripts expression Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: DATABASE (Oxford: Oxford Journals, 2009-
Oxford,UK: Oxford University Press) pp. bat050-bat050 - issn: 1758-0463 - wos: WOS:000322067200001 (10) - scopus: 2-s2.0-84940234571 (11)
2108/77520 - 2013 -
webPDBinder: a server for the identification of ligand binding sites on protein structures Helmer Citterich, Manuela; Ausiello, Gabriele - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. W308-W308-13 - issn: 0305-1048 - wos: WOS:000323603200049 (6) - scopus: 2-s2.0-84883568831 (7)
2108/74771 - 2013 -
Experimental and computational methods for the analysis and modeling of signaling networks Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NEW BIOTECHNOLOGY (Amsterdam : Elsevier Life Science) pp. 327-332 - issn: 1871-6784 - wos: WOS:000317240000012 (3) - scopus: 2-s2.0-84878107994 (3)
2108/77892 - 2012 -
Mapping the human phosphatome on growth pathways Sacco, Francesca; Gherardini, Pier Federico; Paoluzi, Serena; Helmer Citterich, Manuela; Ragnini, Antonella; Castagnoli, Luisa; Cesareni, Giovanni - 01 - Articolo su rivista
rivista: MOLECULAR SYSTEMS BIOLOGY (London : Nature Pub. Group) pp. 603-603 - issn: 1744-4292 - wos: WOS:000308316400003 (20) - scopus: 2-s2.0-84868282067 (18)
2108/69847 - 2012 -
B-Pred, a structure based B-cell epitopes prediction server Giaco', Luciano; Amicosante, Massimo; Fraziano, Maurizio; Gherardini, Pier Federico; Ausiello, Gabriele; Helmer Citterich, Manuela; Colizzi, Vittorio; Cabibbo, Andrea - 01 - Articolo su rivista
rivista: ADVANCES AND APPLICATIONS IN BIOINFORMATICS AND CHEMISTRY ([Auckland, N.Z. : Dove Medical Press]) pp. 11-21 - issn: 1178-6949 - wos: (0) - scopus: 2-s2.0-84878890474 (16)
2108/303167 - 2012 -
Modeling gene regulatory network motifs using Statecharts Fioravanti, Fabio; Helmer Citterich, Manuela; Nardelli, Enrico - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. - - issn: 1471-2105 - wos: WOS:000303936400021 (9) - scopus: 2-s2.0-84865127111 (11)
2108/74627 - 2012 -
Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities Gherardini, Pier Federico; Helmer Citterich, Manuela; Ausiello, Gabriele - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. - - issn: 1471-2105 - wos: WOS:000303936400018 (16) - scopus: 2-s2.0-84864936114 (16)
2108/74770 - 2012 -
Identification of nucleotide-binding sites in protein structures: a novel approach based on nucleotide modularity Gherardini, Pier Federico; Helmer Citterich, Manuela; Ausiello, Gabriele - 01 - Articolo su rivista
rivista: PLOS ONE (San Francisco, CA : Public Library of Science) pp. e50240-e50240 - issn: 1932-6203 - wos: WOS:000311885800056 (6) - scopus: 2-s2.0-84870276089 (6)
2108/73447 - 2012 -
What have proteomics taught us about Leishmania development? Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: PARASITOLOGY (London: Cambridge University Press, 1908-) pp. 1146-1157 - issn: 0031-1820 - wos: WOS:000308382200005 (29) - scopus: 2-s2.0-84864999160 (28)
2108/74768 - 2012 -
Deciphering a global network of functionally associated post-translational modifications Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: MOLECULAR SYSTEMS BIOLOGY (London : Nature Pub. Group) pp. - - issn: 1744-4292 - wos: WOS:000307174800008 (190) - scopus: 2-s2.0-84864184970 (200)
2108/77068 - 2012 -
Bioinformatics in Italy: BITS2011, the Eighth Annual Meeting of the Italian Society of Bioinformatics Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. I1-I1 - issn: 1471-2105 - wos: WOS:000303936400001 (0) - scopus: 2-s2.0-84865140691 (0)
2108/74767 - 2012 -
Modeling gene regulatory network motifs using Statecharts Helmer Citterich, Manuela; Nardelli, Enrico - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. - - issn: 1471-2105 - wos: WOS:000303936400021 (9) - scopus: 2-s2.0-84865127111 (11)
2108/14876 - 2011 -
Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. D268-D271 - issn: 0305-1048 - wos: WOS:000285831700045 (37) - scopus: 2-s2.0-78651323535 (39)
2108/15046 - 2011 -
Phosphate binding sites identification in protein structures Gherardini, Pier Federico; Helmer Citterich, Manuela; Ausiello, Gabriele - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. 1231-42- - issn: 0305-1048 - wos: WOS:000288019400013 (14) - scopus: 2-s2.0-79952351456 (15)
2108/15040 - 2011 -
Phosfinder: a web server for the identification of phosphate-binding sites on protein structures Gherardini, Pier Federico; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. - - issn: 0305-1048 - wos: WOS:000292325300045 (12) - scopus: 2-s2.0-79959938469 (12)
2108/42697 - 2011 -
PhosTryp: a phosphorylation sites predictor specific for parasitic protozoa of the family trypanosomatidae Gherardini, Pier Federico; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC GENOMICS (London: BioMed Central, 2000-) pp. 614- - issn: 1471-2164 - wos: WOS:000300735700001 (18) - scopus: 2-s2.0-83655180753 (19)
2108/15198 - 2011 -
From sequence to structural analysis in protein phosphorylation motifs Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: FRONTIERS IN BIOSCIENCE ([Alberton, NY] : Frontiers in Bioscience, 2009-) pp. 1261-1275 - issn: 1945-0494 - wos: WOS:000290093700004 (18) - scopus: 2-s2.0-78651272733 (18)
2108/15203 - 2011 -
Adaptation of a 2D in-gel kinase assay to trace phosphotransferase activities in the human pathogen Leishmania donovani Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: JOURNAL OF PROTEOMICS () pp. - - issn: 1874-3919 - wos: WOS:000295149000014 (7) - scopus: 2-s2.0-80051673320 (7)
2108/15086 - 2010 -
Superpose3D: a local structural comparison program that allows for user-defined structure representations Gherardini, Pier Federico; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: PLOS ONE (San Francisco, CA : Public Library of Science) pp. e11988- - issn: 1932-6203 - wos: WOS:000280605400021 (14) - scopus: 2-s2.0-77957760751 (12)
2108/14881 - 2010 -
ELM: the status of the 2010 eukaryotic linear motif resource Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. D167-D180 - issn: 0305-1048 - wos: WOS:000276399100027 (199) - scopus: 2-s2.0-71749098088 (210)
2108/15047 - 2010 -
Modular architecture of nucleotide-binding pockets Gherardini, Pier Federico; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. 3809-3816 - issn: 0305-1048 - wos: WOS:000279188800035 (25) - scopus: 2-s2.0-77954364272 (24)
2108/14879 - 2010 -
Cyclosporin A treatment of Leishmania donovani reveals stage-specific functions of cyclophilins in parasite proliferation and viability Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: PLOS NEGLECTED TROPICAL DISEASES (San Francisco, CA : Public Library of Science) pp. E729- - issn: 1935-2727 - wos: WOS:000279341300034 (33) - scopus: 2-s2.0-77956997367 (35)
2108/14880 - 2010 -
Identification of Leishmania-specific protein phosphorylation sites by LC-ESI-MS/MS and comparative genomics analyses Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: PROTEOMICS (Wiley-VCH Verlag GmBH:PO Box 101161, D 69451 Weinheim Germany:011 49 6201 606147, EMAIL: service@wiley-vch.de, INTERNET: http://www.wiley-vch.de, Fax: 011 49 6201 606328) pp. 3868-3883 - issn: 1615-9853 - wos: WOS:000284045300009 (30) - scopus: 2-s2.0-78049391406 (38)
2108/15139 - 2009 -
A structure filter for the Eukaryotic Linear Motif Resource Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. 351- - issn: 1471-2105 - wos: WOS:000271764300001 (34) - scopus: 2-s2.0-71749106147 (40)
2108/15049 - 2009 -
Structural motifs recurring in different folds recognize the same ligand fragments Ausiello, Gabriele; Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. 182- - issn: 1471-2105 - wos: WOS:000267597100001 (11) - scopus: 2-s2.0-67649891099 (12)
2108/15050 - 2008 -
FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures Ausiello, Gabriele; Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. S2- - issn: 1471-2105 - wos: WOS:000259022900002 (27) - scopus: 2-s2.0-43349087464 (30)
2108/15192 - 2008 -
Structure-based function prediction: approaches and applications Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BRIEFINGS IN FUNCTIONAL GENOMICS & PROTEOMICS (-London : Henry Stewart, 2002-2009.
-Oxford : Oxford Journals) pp. 291-302 - issn: 1473-9550 - wos: (0) - scopus: 2-s2.0-53249156104 (63)
2108/14722 - 2007 -
Phospho3D: a database of three-dimensional structures of protein phosphorylation sites Ausiello, Gabriele; Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. D229-D231 - issn: 0305-1048 - wos: WOS:000243494600047 (40) - scopus: 2-s2.0-33846097128 (41)
2108/15200 - 2007 -
Convergent evolution of enzyme active sites is not a rare phenomenon Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: JOURNAL OF MOLECULAR BIOLOGY (-LONDON, ENGLAND: ACADEMIC PRESS LTD ELSEVIER SCIENCE LTD,
-London; New York: Academic Press.) pp. 817-845 - issn: 0022-2836 - wos: WOS:000249494800020 (89) - scopus: 2-s2.0-34548241399 (94)
2108/15215 - 2007 -
False occurrences of functional motifs in protein sequences highlight evolutionary constraints Gherardini, Pier Federico; Ausiello, Gabriele; Scalia Tomba, Gianpaolo; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. 68- - issn: 1471-2105 - wos: WOS:000244856400001 (7) - scopus: 2-s2.0-33947389235 (9)
2108/15337 - 2007 -
Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. S24- - issn: 1471-2105 - wos: WOS:000246602100024 (14) - scopus: 2-s2.0-34248185418 (17)
2108/15191 - 2007 -
SH3-Hunter: discovery of SH3 domain interaction sites in proteins Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. W451-W454 - issn: 0305-1048 - wos: WOS:000255311500085 (29) - scopus: 2-s2.0-34547571029 (30)
2108/15194 - 2007 -
3dLOGO: a web server for the identification, analysis and use of conserved protein substructures Gherardini, Pier Federico; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. W416-W419 - issn: 0305-1048 - wos: WOS:000255311500078 (4) - scopus: 2-s2.0-34547561586 (6)
2108/15338 - 2006 -
A novel structure-based encoding for machine-learning applied to the inference of SH3 domain specificity Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BIOINFORMATICS (-Oxford : Oxford University Press, 1998-) pp. 2333-2339 - issn: 1367-4803 - wos: WOS:000241271000004 (21) - scopus: 2-s2.0-33750030012 (21)
2108/15339 - 2005 -
PDBFun: mass selection and fast comparison of annotated PDB residues Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. W133-W137 - issn: 0305-1048 - wos: WOS:000230271400024 (23) - scopus: 2-s2.0-23144463514 (31)
2108/15340 - 2005 -
Seq2Struct: a resource for establishing sequence-structure links Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BIOINFORMATICS (-Oxford : Oxford University Press, 1998-) pp. 551-553 - issn: 1367-4803 - wos: WOS:000227127000020 (8) - scopus: 2-s2.0-14644435044 (8)
2108/15341 - 2005 -
Functional annotation by identification of local surface similarities: a novel tool for structural genomics Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. 194- - issn: 1471-2105 - wos: WOS:000231423000001 (30) - scopus: 2-s2.0-25444441067 (31)
2108/15262 - 2005 -
A neural strategy for the inference of SH3 domain-peptide interaction specificity Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. S13- - issn: 1471-2105 - wos: WOS:000236064600013 (8) - scopus: 2-s2.0-33947315301 (10)
2108/15261 - 2005 -
Query3d: a new method for high-throughput analysis of functional residues in protein structures Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. S5- - issn: 1471-2105 - wos: WOS:000236064600005 (39) - scopus: 2-s2.0-33947201695 (50)
2108/14891 - 2004 -
SURFACE: a database of protein surface regions for functional annotation Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. D240-D244 - issn: 0305-1048 - wos: WOS:000188079000055 (43) - scopus: 2-s2.0-0346494936 (54)
2108/14892 - 2004 -
A structural study for the optimisation of functional motifs encoded in protein sequences Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. 50- - issn: 1471-2105 - wos: WOS:000222226000002 (6) - scopus: 2-s2.0-2942549126 (7)
2108/55788 - 2004 -
The Internet for Molecular and Cellular Biologists, Second Edition Helmer Citterich, Manuela; Cabibbo, Andrea - 04 - Monografia
2108/15520 - 2003 -
Searching the MINT database for protein interaction information Cesareni, Giovanni; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: CURRENT PROTOCOLS IN BIOINFORMATICS (New York : Wiley, c2003-) pp. Unit 8.5- - issn: 1934-3396 - wos: (0) - scopus: 2-s2.0-43349087727 (3)
2108/15523 - 2003 -
Introduzione alla Bioinformatica Helmer Citterich, Manuela - 04 - Monografia
2108/14890 - 2003 -
iSPOT: A web tool to infer the interaction specificity of families of protein modules Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. 3709-3711 - issn: 0305-1048 - wos: WOS:000183832900091 (29) - scopus: 2-s2.0-0041620239 (35)
2108/14884 - 2003 -
Development of computational tools for the inference of protein interaction specificity rules and functional annotation using structural information Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: COMPARATIVE AND FUNCTIONAL GENOMICS () pp. 416-419 - issn: 1531-6912 - wos: WOS:000185279400008 (1) - scopus: 2-s2.0-0042386403 (1)
2108/14889 - 2003 -
ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins Ausiello, Gabriele; Cesareni, Giovanni; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford : Oxford University Press) pp. 3625-3630 - issn: 1362-4962 - wos: WOS:000183832900073 (496) - scopus: 2-s2.0-0042622252 (526)
2108/15524 - 2002 -
The Internet for Cell and Molecular Biologists Cabibbo, Andrea; Helmer Citterich, Manuela - 04 - Monografia
2108/14878 - 2002 -
The SH3 domain of nebulin binds selectively to type II peptides: theoretical prediction and experimental validation Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: JOURNAL OF MOLECULAR BIOLOGY (-LONDON, ENGLAND: ACADEMIC PRESS LTD ELSEVIER SCIENCE LTD,
-London; New York: Academic Press.) pp. 305-315 - issn: 0022-2836 - wos: WOS:000174108100009 (21) - scopus: 2-s2.0-0036297653 (21)
2108/15521 - 2002 -
MINT: a Molecular INTeraction database Ausiello, Gabriele; Helmer Citterich, Manuela; Cesareni, Giovanni - 01 - Articolo su rivista
rivista: FEBS LETTERS (Elsevier BV:PO Box 211, 1000 AE Amsterdam Netherlands:011 31 20 4853757, 011 31 20 4853642, 011 31 20 4853641, EMAIL: nlinfo-f@elsevier.nl, INTERNET: http://www.elsevier.nl, Fax: 011 31 20 4853598) pp. 135-140 - issn: 0014-5793 - wos: WOS:000174208800022 (537) - scopus: 2-s2.0-0037138406 (631)
2108/15516 - 2001 -
iSPOT: a web tool for the analysis and recognition of protein domain specificity Cesareni, Giovanni; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: COMPARATIVE AND FUNCTIONAL GENOMICS () pp. 314-318 - issn: 1531-6912 - wos: WOS:000171940700009 (8) - scopus: 2-s2.0-0035168032 (9)
2108/14877 - 2001 -
Distinct binding specificity of the multiple PDZ domains of INADL, a human protein with homology to INAD from Drosophila melanogaster Helmer Citterich, Manuela; Cesareni, Giovanni - 01 - Articolo su rivista
rivista: THE JOURNAL OF BIOLOGICAL CHEMISTRY (American Society for Biochemistry and Molecular Biology:9650 Rockville Pike:Bethesda, MD 20814:(301)530-7145, EMAIL: asbmb@asbmb.faseb.org, INTERNET: http://www.faseb.org/asbmb, Fax: (301)571-1824) pp. 42122-42130 - issn: 0021-9258 - wos: WOS:000172450400079 (52) - scopus: 2-s2.0-0035834678 (60)
2108/15495 - 2000 -
Three-dimensional view of the surface motif associated with the P-loop structure: cis and trans cases of convergent evolution Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: JOURNAL OF MOLECULAR BIOLOGY (-LONDON, ENGLAND: ACADEMIC PRESS LTD ELSEVIER SCIENCE LTD,
-London; New York: Academic Press.) pp. 455-465 - issn: 0022-2836 - wos: WOS:000165270900002 (68) - scopus: 2-s2.0-0034602364 (71)
2108/15458 - 2000 -
SH3-SPOT: an algorithm to predict preferred ligands to different members of the SH3 gene family Cesareni, Giovanni; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: JOURNAL OF MOLECULAR BIOLOGY (-LONDON, ENGLAND: ACADEMIC PRESS LTD ELSEVIER SCIENCE LTD,
-London; New York: Academic Press.) pp. 313-328 - issn: 0022-2836 - wos: WOS:000086831200012 (72) - scopus: 2-s2.0-0034724569 (73)
2108/15476 - 2000 -
Identification of a putative binding site for negatively charged surfaces in the fibronectin type II domain of human factor XII--an immunochemical and homology modeling approach Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: THROMBOSIS AND HAEMOSTASIS (Stuttgart: Thieme
Stuttgart: Schattauer) pp. 1057-1065 - issn: 0340-6245 - wos: WOS:000166080600021 (44) - scopus: 2-s2.0-0034533548 (49)
2108/15497 - 2000 -
Protein surface similarities: a survey of methods to describe and compare protein surfaces Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: CELLULAR AND MOLECULAR LIFE SCIENCES (Birkhaeuser Verlag AG:Viaduktstrasse 42-44, CH 4051 Basel Switzerland:011 41 61 2050707, EMAIL: subscriptions@birkhauser.ch, INTERNET: http://www.birkhauser.ch, Fax: 011 41 61 2050792) pp. 1970-1977 - issn: 1420-682X - wos: WOS:000166644300016 (51) - scopus: 2-s2.0-0034489092 (57)
2108/15389 - 1998 -
Three-dimensional profiles: a new tool to identify protein surface similarities Ausiello, Gabriele; Cesareni, Giovanni; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: JOURNAL OF MOLECULAR BIOLOGY (-LONDON, ENGLAND: ACADEMIC PRESS LTD ELSEVIER SCIENCE LTD,
-London; New York: Academic Press.) pp. 1211-1221 - issn: 0022-2836 - wos: WOS:000077467300032 (35) - scopus: 2-s2.0-0032509148 (42)
2108/15478 - 1998 -
Design and properties of a Myc derivative that efficiently homodimerizes Helmer Citterich, Manuela; Cesareni, Giovanni - 01 - Articolo su rivista
rivista: ONCOGENE (Macmillan Magazines Limited:Porters South Crinian Street, London N1 9XW United Kingdom:011 44 207 8334000, 011 44 171 8434982, Fax: 011 44 207 812358) pp. 2463-2472 - issn: 0950-9232 - wos: WOS:000076927300006 (153) - scopus: 2-s2.0-0032511987 (161)
2108/15517 - 1998 -
Structural studies on an inhibitory antibody against Thermus aquaticus DNA polymerase suggest mode of inhibition Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: PROTEIN ENGINEERING (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485) pp. 79-86 - issn: 0269-2139 - wos: WOS:000073239800002 (10) - scopus: 2-s2.0-0031894376 (9)
2108/15477 - 1997 -
Correlated mutations contain information about protein-protein interaction Helmer Citterich, Manuela; Ausiello, Gabriele - 01 - Articolo su rivista
rivista: JOURNAL OF MOLECULAR BIOLOGY (-LONDON, ENGLAND: ACADEMIC PRESS LTD ELSEVIER SCIENCE LTD,
-London; New York: Academic Press.) pp. 511-523 - issn: 0022-2836 - wos: WOS:A1997XU53600003 (401) - scopus: 2-s2.0-0030821675 (440)
2108/15039 - 1997 -
ESCHER: a new docking procedure applied to the reconstruction of protein tertiary structure Ausiello, Gabriele; Cesareni, Giovanni; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: PROTEINS (John Wiley & Sons Incorporated:Customer Service, 111 River Street:Hoboken, NJ 07030:(800)225-5945, (201)748-6000, EMAIL: societyinfo@wiley.com, INTERNET: http://www.wiley.com, Fax: (212)748-6551) pp. 556-567 - issn: 0887-3585 - wos: WOS:A1997XP46300009 (63) - scopus: 2-s2.0-0030855390 (74)
2108/15518 - 1997 -
Homology modeling of Neurospora crassa geranylgeranyl pyrophosphate synthase: structural interpretation of mutant phenotypes Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: PROTEIN ENGINEERING (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485) pp. 1047-1055 - issn: 0269-2139 - wos: WOS:000071300700007 (9) - scopus: 2-s2.0-0031468963 (9)
2108/15499 - 1996 -
HMG1 interacts with HOX proteins and enhances their DNA binding and transcriptional activation Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: EMBO JOURNAL (attuale:
NATURE PUBLISHING GROUP, 345 PARK AVENUE SOUTH, NEW YORK, USA, NY, 10010-1707
Precedente:
Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485) pp. 4981-4991 - issn: 0261-4189 - wos: WOS:A1996VL09500021 (213) - scopus: 2-s2.0-0029811475 (220)
2108/15459 - 1995 -
Modelling antibody-antigen interactions: ferritin as a case study Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: MOLECULAR IMMUNOLOGY (-Oxford :Elsevier Science Limited
-Oxford; New York: Pergamon Press.) pp. 1001-1010 - issn: 0161-5890 - wos: WOS:A1995TA13900009 (14) - scopus: 2-s2.0-0028821991 (16)
2108/15515 - 1994 -
Molecular models and structural comparisons of native and mutant class I filamentous bacteriophages Ff (fd, f1, M13), If1 and IKe Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: JOURNAL OF MOLECULAR BIOLOGY (-LONDON, ENGLAND: ACADEMIC PRESS LTD ELSEVIER SCIENCE LTD,
-London; New York: Academic Press.) pp. 260-286 - issn: 0022-2836 - wos: WOS:A1994MR30400027 (186) - scopus: 2-s2.0-0028058295 (204)
2108/15519 - 1994 -
PUZZLE: a new method for automated protein docking based on surface shape complementarity Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: JOURNAL OF MOLECULAR BIOLOGY (-LONDON, ENGLAND: ACADEMIC PRESS LTD ELSEVIER SCIENCE LTD,
-London; New York: Academic Press.) pp. 1021-1031 - issn: 0022-2836 - wos: WOS:A1994MT70100015 (81) - scopus: 2-s2.0-0027958638 (88)
2108/15522 - 1991 -
Control of ColE1 plasmid replication by antisense RNA Cesareni, Giovanni; Helmer Citterich, Manuela; Castagnoli, Luisa - 01 - Articolo su rivista
rivista: TRENDS IN GENETICS (Elsevier Applied Science:An Imprint of Elsevier Science Ltd, The Boulevard, Langford Lane, Kidlington Oxford OX5 1GB United Kingdom:011 44 1865 843000, 011 44 1865 843699, EMAIL: nlinfo-f@elsevier.nl OR usinfo-f@elsevier.com OR forinfo-kyf04035@niftyserve.or.jp, INTERNET: http://www.elsevier.nl/, Fax: 011 44 1865 843010) pp. 230-235 - issn: 0168-9525 - wos: WOS:A1991FR77600006 (99) - scopus: 2-s2.0-0025731898 (104)
2108/52385 - 1991 -
Control of ColE1 plasmid replication by antisense RNA Cesareni, Giovanni; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: TRENDS IN GENETICS (Elsevier Applied Science:An Imprint of Elsevier Science Ltd, The Boulevard, Langford Lane, Kidlington Oxford OX5 1GB United Kingdom:011 44 1865 843000, 011 44 1865 843699, EMAIL: nlinfo-f@elsevier.nl OR usinfo-f@elsevier.com OR forinfo-kyf04035@niftyserve.or.jp, INTERNET: http://www.elsevier.nl/, Fax: 011 44 1865 843010) pp. 230-235 - issn: 0168-9525 - wos: WOS:A1991FR77600006 (99) - scopus: 2-s2.0-0025731898 (104)
2108/15498 - 1988 -
Control of ColE1 replication: low affinity specific binding of Rop (Rom) to RNAI and RNAII Helmer Citterich, Manuela; Cesareni, Giovanni - 01 - Articolo su rivista
rivista: EMBO JOURNAL (attuale:
NATURE PUBLISHING GROUP, 345 PARK AVENUE SOUTH, NEW YORK, USA, NY, 10010-1707
Precedente:
Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485) pp. 557-566 - issn: 0261-4189 - wos: (0) - scopus: 2-s2.0-0023958576 (46)
2108/15479 - 1985 -
RNA processing in Neurospora crassa mitochondria: transfer RNAs punctuate a large precursor transcript Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: EMBO JOURNAL (attuale:
NATURE PUBLISHING GROUP, 345 PARK AVENUE SOUTH, NEW YORK, USA, NY, 10010-1707
Precedente:
Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485) pp. 197-204 - issn: 0261-4189 - wos: (0) - scopus: 2-s2.0-0021994414 (42)
2108/15496 - 1983 -
Nucleotide sequence and intron structure of the apocytochrome b gene of Neurospora crassa mitochondria Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: EMBO JOURNAL (attuale:
NATURE PUBLISHING GROUP, 345 PARK AVENUE SOUTH, NEW YORK, USA, NY, 10010-1707
Precedente:
Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485) pp. 1235-1242 - issn: 0261-4189 - wos: (0) - scopus: 2-s2.0-1542671272 (49)