MANUELA HELMER CITTERICH

Professore ordinario


email: citterich@uniroma2.it
telefono: 0672594324
edificio: SOGENE
stanza: 4324


Istruzione e formazione


1981 Laurea in Fisica, Università di Roma La Sapienza. Tesi col prof. Mario Ageno in Biofisica

1981-1984 Lavoro con Giuseppe Macino, sull’organizzazione genica e la regolazione della trascrizione nei mitocondri di Neurospora crassa (biologia molecolare)

1986-1988 EMBL (Heidelberg) post-doc con Gianni Cesareni, lavorando sull’interazione RNAproteina nel sistema di ColE1 system (biologia molecolare)

1991-1993 Ospite di Anna Tramontano presso l’IRBM, lavorando allo sviluppo di un programma di docking, ovvero un programma per la ricostruzione di complessi proteici a partire dalle coordinate 3D dei loro componenti separati (bioinformatica strutturale)


Impiego

1984-1999 Ricercatrice, Dipartimento di Biologia, Università di Roma Tor Vergata

1984 ad oggi membro della SIBBM (Società Italiana di Biofisica e Biologia Molecolare)

1997 ad oggi Group leader, Dipartimento di Biologia, Università di Roma Tor Vergata

1998 ad oggi Direttrice del Centro di Bioinformatica Molecolare, Dipartimento di Biologia, Università di Roma Tor Vergata

2000-2004 Professore Associato, Dipartimento di Biologia, Università di Roma Tor Vergata

2003-2016 Socio Fondatore e Membro del Direttivo di of BITS (Bioinformatics Italian Society)

2005 attuale posizione Professore Ordinario di Bioinformatica e Biologia Molecolare, Dipartimento di Biologia,

Università di Roma Tor Vergata

2004-2019 Coordinatrice della Laurea Magistrale in Bioinformatica, Università di Roma Tor Vergata

Insegnamenti


1992-2002 Laboratorio di Metodologie Genetiche (primo corso di Bioinformatica in una Laurea in Biologia italiana)

2002 ad oggi Bioinformatica nella Laurea Triennale in Scienze Biologiche (6 cfu)

2009 ad oggi Biologia Molecolare e Bioinformatica nella Laurea Magistrale in Bioinformatica (9 cfu)

2013 ad oggi Biologia Molecolare nella Laurea Triennale in Scienze Biologiche (8 cfu)

2022 ad oggi Biologia Molecolare nella Laurea Triennale in Scienze Biologiche (6 cfu)

Riconoscimenti e onori


2000-2004 Membro dello Steering Committee della European Science Foundation Programma in Functional Genomics

2009-2016 Presidente della Società Italiana di Bioinformatica (BITS, http://bioinformatics.it)

2013-2017 Membro dello Scientific Advisory Board del PDBe (EBI)

2014-2019 Membro dell’Advisory Committee dell’INGM (National Institute of Molecular Genetics)

2016-present Presidente Onorario e Socio della Società Italiana di Bioinformatica

2017 Premio BITS 2017, Cagliari, Luglio 2017

2019-present Rappresentante Italiana nella 3D-Bioinfo ELIXIR Community

2020 Keynote speaker a RECOMB 2020

2020-present Membro dello Scientific Advisory Committee di ELIXIR Greece

2021 Membro dell’Advisory Committee Dipartimento di Eccellenza “Classe di Scienze” - Scuola Normale Superiore -Pisa


Interessi di ricerca

Bioinformatica, Biologia Computazionale, Analisi di sequenze e strutture di RNA, Bioinformatica Strutturale, Interazioni Molecolari, Sviluppo di Strumenti Computazionali


Produzione scientifica

2108/361483 - 2024 - A meta-analysis approach to gene regulatory network inference identifies key regulators of cardiovascular diseases
Pepe, Gerardo; Appierdo, Romina; Ausiello, Gabriele; Helmer Citterich, Manuela; Gherardini, Pier Federico - 01 - Articolo su rivista
rivista: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (Basel: MDPI Center) pp. - - issn: 1422-0067 - wos: WOS:001210099700001 (1) - scopus: 2-s2.0-85191386951 (1)

2108/373494 - 2024 - Human lncRNAs harbor conserved modules embedded in different sequence contexts
Ballesio, Francesco; Pepe, Gerardo; Ausiello, Gabriele; Novelletto, Andrea; Helmer Citterich, Manuela; Gherardini, Pier Federico - 01 - Articolo su rivista
rivista: NON-CODING RNA RESEARCH ([Amsterdam] : Production and hosting by Elsevier B.V. on behalf of KeAi Communications Co. Ltd.) pp. 1257-1270 - issn: 2468-0540 - wos: WOS:001273502800001 (0) - scopus: 2-s2.0-85196831816 (0)

2108/344683 - 2024 - NRF2 connects Src tyrosine kinase to ferroptosis resistance in glioblastoma
Cirotti, Claudia; Taddei, Irene; Contadini, Claudia; Di Girolamo, Claudia; Pepe, Gerardo; De Bardi, Marco; Helmer Citterich, Manuela; Barila', Daniela - 01 - Articolo su rivista
rivista: LIFE SCIENCE ALLIANCE ([Woodbury NY]: Life Science Alliance LLC, [2018]-) pp. - - issn: 2575-1077 - wos: WOS:001112691200011 (4) - scopus: 2-s2.0-85175218482 (4)

2108/357743 - 2024 - Unveiling the signaling network of FLT3-ITD AML improves drug sensitivity prediction
Latini, Sara; Venafra, Veronica; Massacci, Giorgia; Bica, Valeria; Graziosi, Simone; Pugliese, Giusj Monia; Iannuccelli, Marta; Pepe, Gerardo; Helmer Citterich, Manuela; Perfetto, Livia; Sacco, Francesca - 01 - Articolo su rivista
rivista: ELIFE (Cambridge: eLife Sciences Publications) pp. - - issn: 2050-084X - wos: WOS:001196100200001 (0) - scopus: (0)

2108/344663 - 2023 - Exploring the landscape of tools and resources for the analysis of long non-coding RNAs
Pepe, Gerardo; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (Göteborg : Chalmers University of Technology, 2011-) pp. 4706-4716 - issn: 2001-0370 - wos: WOS:001147175300001 (2) - scopus: 2-s2.0-85173141032 (2)

2108/324227 - 2023 - Looking for plant microRNAs in human blood samples: bioinformatics evidence and perspectives
Olmi, Lorenzo; Pepe, Gerardo; Helmer Citterich, Manuela; Canini, Antonella; Gismondi, Angelo - 01 - Articolo su rivista
rivista: PLANT FOODS FOR HUMAN NUTRITION (Dordrecht : Kluwer) pp. 399-406 - issn: 1573-9104 - wos: WOS:000999249900001 (5) - scopus: 2-s2.0-85160762966 (8)

2108/344664 - 2023 - Inhibition of exosome biogenesis affects cell motility in heterogeneous sub-populations of paediatric-type diffuse high-grade gliomas
Petrilli, Lucia Lisa; Pepe, Gerardo; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: CELL & BIOSCIENCE (London : BioMed Central) pp. - - issn: 2045-3701 - wos: WOS:001101609500001 (1) - scopus: 2-s2.0-85176455906 (1)

2108/380523 - 2023 - Clinical and functional characterization of COL2A1 p.Gly444Ser variant: From a fetal phenotype to a previously undisclosed postnatal phenotype
Marchionni, Enrica; D'apice, Maria Rosaria; Lupo, Viviana; Pepe, Gerardo; Helmer Citterich, Manuela; Campione, Elena; Spitalieri, Paola; Pucci, Noemi; Picchi, Eliseo; Garaci, Francesco Giuseppe; Novelli, Giuseppe - 01 - Articolo su rivista
rivista: BONE REPORTS (New York : Elsevier) pp. 101728- - issn: 2352-1872 - wos: WOS:001165213700001 (0) - scopus: 2-s2.0-85178200947 (0)

2108/354164 - 2023 - Epigenetic priming of an epithelial enhancer by p63 and CTCF controls expression of a skin-restricted gene XP33
Smirnov, Artem; Lena, Anna Maria; Tosetti, Giulia; Cappello, Angela; Helmer Citterich, Manuela; Candi, Eleonora - 01 - Articolo su rivista
rivista: CELL DEATH DISCOVERY ([London]: Nature Publishing Group, 2015-) pp. 446- - issn: 2058-7716 - wos: WOS:001117951400001 (2) - scopus: 2-s2.0-85178921071 (2)

2108/292081 - 2022 - Evaluation of potential miRNA sponge effects of SARS genomes in human
Pepe, Gerardo; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NON-CODING RNA RESEARCH ([Amsterdam] : Production and hosting by Elsevier B.V. on behalf of KeAi Communications Co. Ltd.) pp. 48-53 - issn: 2468-0540 - wos: WOS:000760777100007 (9) - scopus: 2-s2.0-85124484510 (9)

2108/293527 - 2022 - PDBe-KB: collaboratively defining the biological context of structural data
Helmer Citterich, Manuela; Pepe, Gerardo - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford : Oxford University Press) pp. D534-D542 - issn: 1362-4962 - wos: WOS:000743496700065 (44) - scopus: 2-s2.0-85125170185 (49)

2108/296268 - 2022 - Conserved exchange of paralog proteins during neuronal differentiation
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: LIFE SCIENCE ALLIANCE ([Woodbury NY]: Life Science Alliance LLC, [2018]-) pp. e202201397- - issn: 2575-1077 - wos: WOS:000769773000001 (0) - scopus: 2-s2.0-85126407593 (0)

2108/307779 - 2022 - Artificial intelligence methods enhance the discovery of RNA interactions
Pepe, Gerardo; Helmer Citterich, Manuela; Gherardini, Pier Federico - 01 - Articolo su rivista
rivista: FRONTIERS IN MOLECULAR BIOSCIENCES (Lausanne : Frontiers Media S.A., 2014-) pp. - - issn: 2296-889X - wos: WOS:000875656500001 (3) - scopus: 2-s2.0-85140450709 (2)

2108/307757 - 2022 - Dissecting the Genome for Drug Response Prediction
Pepe, Gerardo; Helmer Citterich, Manuela - 03 - Contributo in libro
libro: Data mining techniques for the life technologies - ()

2108/307756 - 2022 - Variation in the co-expression profile highlights a loss of miRNA-mRNA regulation in multiple cancer types
Pepe, Gerardo; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NON-CODING RNA RESEARCH ([Amsterdam] : Production and hosting by Elsevier B.V. on behalf of KeAi Communications Co. Ltd.) pp. 98-105 - issn: 2468-0540 - wos: WOS:000789187900006 (2) - scopus: 2-s2.0-85126990330 (2)

2108/307758 - 2022 - Type I IFNs promote cancer cell stemness by triggering the epigenetic regulator KDM1B
Pietrosanto, Marco; Helmer Citterich, Manuela; Vitale, Sara; Vitale, Ilio - 01 - Articolo su rivista
rivista: NATURE IMMUNOLOGY (New York NY: Nature Pub. Group, ©2000-) pp. 1379-1392 - issn: 1529-2916 - wos: WOS:000844434100003 (59) - scopus: 2-s2.0-85136883660 (57)

2108/276236 - 2021 - Variants in mhy7 gene cause arrhythmogenic cardiomyopathy
Ferradini, Valentina; Lanzillo, Chiara; Novelli, Giuseppe; Helmer Citterich, Manuela; Sangiuolo, Federica Carla - 01 - Articolo su rivista
rivista: GENES (Basel : Molecular Diversity Preservation International) pp. - - issn: 2073-4425 - wos: WOS:000666548100001 (5) - scopus: 2-s2.0-85107115523 (5)

2108/292027 - 2021 - Motif Discovery from CLIP Experiments
Pietrosanto, Marco; Ausiello, Gabriele; Helmer Citterich, Manuela - 03 - Contributo in libro
libro: RNA Bioinformatics - (978-1-0716-1307-8)

2108/291978 - 2021 - Relative Information Gain: Shannon entropy-based measure of the relative structural conservation in RNA alignments
Pietrosanto, Marco; Adinolfi, Marta; Ausiello, Gabriele; Vitale, Ilio; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NAR GENOMICS AND BIOINFORMATICS (Oxford: Oxford University Press, 2019-) pp. lqab007- - issn: 2631-9268 - wos: WOS:000698594000016 (4) - scopus: 2-s2.0-85110299502 (3)

2108/292031 - 2021 - A eutherian-specific microRNA controls the translation of Satb2 in a model of cortical differentiation
Pietrosanto, Marco; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: STEM CELL REPORTS (Amsterdam : Elsevier) pp. 1496-1509 - issn: 2213-6711 - wos: WOS:000659201500012 (8) - scopus: 2-s2.0-85107153422 (8)

2108/292033 - 2021 - BRIO: a web server for RNA sequence and structure motif scan
Pepe, Gerardo; Adinolfi, Marta; Pietrosanto, Marco; Vitale, Ilio; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford : Oxford University Press) pp. W67-W71 - issn: 1362-4962 - wos: WOS:000672775800010 (3) - scopus: 2-s2.0-85110354262 (9)

2108/292035 - 2021 - COTAN: scRNA-seq data analysis based on gene co-expression
Pietrosanto, Marco; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NAR GENOMICS AND BIOINFORMATICS (Oxford: Oxford University Press, 2019-) pp. lqab072- - issn: 2631-9268 - wos: WOS:000745279200016 (8) - scopus: 2-s2.0-85117107330 (9)

2108/292037 - 2021 - Early life adversity affecting the attachment bond alters ventral tegmental area transcriptomic patterning and behavior almost exclusively in female mice
Pietrosanto, Marco; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NEUROBIOLOGY OF STRESS (New York : Elsevier Inc.) pp. 100406- - issn: 2352-2895 - wos: WOS:000709723500003 (5) - scopus: 2-s2.0-85119379843 (6)

2108/252999 - 2020 - WWP1 germline variants are associated with normocephalic autism spectrum disorder
Novelli, Giuseppe; Borgiani, Paola; Biancolella, Michela; Pietrosanto, Marco; Helmer Citterich, Manuela; Giardina, Emiliano - 01 - Articolo su rivista
rivista: CELL DEATH & DISEASE (Nature Group) pp. 529- - issn: 2041-4889 - wos: WOS:000551504300001 (5) - scopus: 2-s2.0-85088388768 (5)

2108/252997 - 2020 - A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community)
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: F1000RESEARCH (London : F1000Research) pp. 278- - issn: 2046-1402 - wos: (0) - scopus: 2-s2.0-85086864843 (9)

2108/230386 - 2020 - PDBe-KB: a community-driven resource for structural and functional annotations
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford : Oxford University Press) pp. D344-D353 - issn: 1362-4962 - wos: WOS:000525956700048 (69) - scopus: 2-s2.0-85075918849 (73)

2108/238650 - 2020 - RISC RNA Sequencing in the Dorsal Raphè Reveals microRNAs Regulatory Activities Associated With Behavioral and Functional Adaptations to Chronic Stress
Pietrosanto, Marco; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BRAIN RESEARCH (Amsterdam; Lausanne; New York; Oxford; Shannon; Tokyo: Elsevier) pp. - - issn: 0006-8993 - wos: WOS:000524457100010 (4) - scopus: 2-s2.0-85081672685 (4)

2108/254254 - 2020 - COVID-19 and genetic variants of protein involved in the SARS-CoV-2 entry into the host cells
Borgiani, Paola; Dauri, Mario; Andreoni, Massimo; Rogliani, Paola; Bernardini, Sergio; Helmer Citterich, Manuela; Biancolella, Michela; Novelli, Giuseppe - 01 - Articolo su rivista
rivista: GENES (Basel : Molecular Diversity Preservation International) pp. - - issn: 2073-4425 - wos: WOS:000581402000001 (81) - scopus: 2-s2.0-85090107885 (89)

2108/214829 - 2019 - Discovering sequence and structure landscapes in RNA interaction motifs
Adinolfi, Marta; Pietrosanto, Marco; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford : Oxford University Press) pp. 4958-4969 - issn: 1362-4962 - wos: WOS:000471248400011 (16) - scopus: 2-s2.0-85067196016 (15)

2108/230433 - 2019 - Modeling cancer drug response through drug-specific informative genes
Pepe, Gerardo; Pietrosanto, Marco; Palmeri, Antonio; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: SCIENTIFIC REPORTS (London: Springer Nature London: Nature Publishing Group) pp. 15222- - issn: 2045-2322 - wos: WOS:000491859500012 (42) - scopus: 2-s2.0-85074078472 (44)

2108/230361 - 2019 - Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
Calderone, Alberto; Castagnoli, Luisa; Cesareni, Giovanni; Helmer Citterich, Manuela; Palmeri, Antonio; Perfetto, Livia; Pirro', Stefano - 01 - Articolo su rivista
rivista: NATURE COMMUNICATIONS (London: Nature Publishing Group-Springer Nature) pp. 2674- - issn: 2041-1723 - wos: WOS:000471758500010 (196) - scopus: 2-s2.0-85067453487 (216)

2108/203283 - 2018 - Fondamenti di bioinformatica
Helmer Citterich, Manuela - 04 - Monografia

2108/203278 - 2018 - Kinome-wide identification of phosphorylation networks in Eukaryotic proteomes
Parca, Luca; Ariano, Bruno; Cabibbo, Andrea; Palmeri, Antonio; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BIOINFORMATICS (-Oxford : Oxford University Press, 1998-) pp. - - issn: 1367-4803 - wos: WOS:000459315700003 (7) - scopus: 2-s2.0-85061118460 (7)

2108/203280 - 2018 - BEAM web server: A tool for structural RNA motif discovery
Pietrosanto, Marco; Adinolfi, Marta; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BIOINFORMATICS (-Oxford : Oxford University Press, 1998-) pp. 1058-1060 - issn: 1367-4803 - wos: WOS:000427887200028 (8) - scopus: 2-s2.0-85044337532 (9)

2108/163054 - 2016 - Next generation sequencing and linkage analysis for the molecular diagnosis of a novel overlapping syndrome characterized by hypertrophic cardiomyopathy and typical electrical instability of brugada syndrome
Giardina, Emiliano; Helmer Citterich, Manuela; Romeo, Francesco; Novelli, Giuseppe; Sangiuolo, Federica Carla - 01 - Articolo su rivista
rivista: CIRCULATION JOURNAL (Tokyo: Japanese Circulation Society Kyoto,Japan: Japanese Circulation Society-Nihon Junkanki Gakkai) pp. 938-949 - issn: 1346-9843 - wos: WOS:000373401900025 (19) - scopus: 2-s2.0-84961659733 (21)

2108/159874 - 2016 - Structural Defects of Laminin β3 N-terminus Underlie Junctional Epidermolysis Bullosa with Altered Granulation Tissue Response
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: ACTA DERMATO-VENEREOLOGICA (ATTUALE: Taylor & Francis Limited:Rankine Road, Basingstoke RG24 8PR United Kingdom:011 44 1256 813035, EMAIL: madeline.sims@tandf.co.uk, info@tandf.co.uk, INTERNET: http://www.tandf.co.uk, Fax: 011 44 1256 330245 PRECEDENTE: Stockholm; Oslo: Scandinavian University Press Scandinavian University Press.) pp. 954-958 - issn: 0001-5555 - wos: WOS:000386473400017 (6) - scopus: 2-s2.0-84992702758 (6)

2108/163606 - 2016 - A novel method for the identification of conserved structural patterns in RNA: From small scale to high-throughput applications
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. 8600-8609 - issn: 0305-1048 - wos: WOS:000386945000011 (18) - scopus: 2-s2.0-84992397328 (20)

2108/159876 - 2016 - c-MYC inhibition impairs hypoxia response in glioblastoma multiforme
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: ONCOTARGET (Albany, N.Y. : Impact Journals) pp. 33257-33271 - issn: 1949-2553 - wos: WOS:000377748500130 (27) - scopus: 2-s2.0-84973524706 (27)

2108/159878 - 2016 - Genome-wide methylation analysis demonstrates that 5-aza-2-deoxycytidine treatment does not cause random DNA demethylation in fragile X syndrome cells
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: EPIGENETICS & CHROMATIN (London : BioMed Central) pp. 12- - issn: 1756-8935 - wos: WOS:000372825700001 (25) - scopus: 2-s2.0-84962323308 (28)

2108/123010 - 2016 - The human rs1050286 polymorphism alters LOX-1 expression through modifying miR-24 binding
Pucci, Sabina; Caporossi, Daniela; Helmer Citterich, Manuela; Novelli, Giuseppe; Amati, Francesca - 01 - Articolo su rivista
rivista: JOURNAL OF CELLULAR AND MOLECULAR MEDICINE (Bucharest : University Press "Carol Davila" Bucharest: Foundation for Cellular and Molecular Medicine, 2000-) pp. 181-187 - issn: 1582-4934 - wos: WOS:000368273700018 (19) - scopus: 2-s2.0-84956591362 (19)

2108/114405 - 2015 - Revealing protein-lncRNA interaction
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BRIEFINGS IN BIOINFORMATICS (-Oxford : Oxford Journals -London : Henry Stewart, 2000-) pp. - - issn: 1467-5463 - wos: WOS:000369219800011 (532) - scopus: 2-s2.0-84960088094 (527)

2108/114407 - 2015 - Preface: BITS2014, the annual meeting of the Italian Society of Bioinformatics
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. S1- - issn: 1471-2105 - wos: WOS:000367875300001 (0) - scopus: 2-s2.0-84943166246 (0)

2108/107760 - 2015 - A simple protocol for the inference of RNA global pairwise alignments
Helmer Citterich, Manuela - 03 - Contributo in libro
libro: RNA Bioinformatics - ()

2108/124592 - 2015 - Tools and data services registry: a community effort to document bioinformatics resources
Cesareni, Giovanni; Helmer Citterich, Manuela; Licata, Luana - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. gkv1116- - issn: 0305-1048 - wos: WOS:000371261700005 (82) - scopus: 2-s2.0-84976872277 (109)

2108/107761 - 2015 - AMBRA1 links autophagy to cell proliferation and tumorigenesis by promoting c-Myc dephosphorylation and degradation
Fuoco, Claudia; Gherardini, Pier Federico; De Zio, Daniela; Nazio, Francesca; Antonioli, Manuela; D'orazio, Melania; Helmer Citterich, Manuela; Piacentini, Mauro; Di Bartolomeo, Sabrina; Cecconi, Francesco - 01 - Articolo su rivista
rivista: NATURE CELL BIOLOGY (Nature America Incorporated:345 Park Avenue South, 6th Floor:New York, NY 10010:(888)331-6288, EMAIL: institutions@natureny.com, INTERNET: http://www.nature.com, Fax: (212)689-9108) pp. 20-30 - issn: 1465-7392 - wos: WOS:000346823900005 (182) - scopus: 2-s2.0-84926145894 (184)

2108/112891 - 2015 - Web-Beagle: a web server for the alignment of RNA secondary structures
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. 493-497 - issn: 0305-1048 - wos: WOS:000359772700078 (26) - scopus: 2-s2.0-84979859183 (26)

2108/116483 - 2015 - Kinome-wide Decoding of Network-Attacking Mutations Rewiring Cancer Signaling
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: CELL (Cell Press:1100 Massachusetts Avenue:Cambridge, MA 02138:(617)661-7057, EMAIL: subs@cell.com, INTERNET: http://www.cellpress.com, Fax: (617)397-2850) pp. 202-217 - issn: 0092-8674 - wos: WOS:000361846500032 (120) - scopus: 2-s2.0-84945921294 (129)

2108/302887 - 2015 - Erratum: AMBRA1 links autophagy to cell proliferation and tumorigenesis by promoting c-Myc dephosphorylation and degradation (Nature Cell Biology (2015) 17 (20-30))
Cianfanelli, Valentina; Fuoco, Claudia; Gherardini, Pier Federico; De Zio, Daniela; Antonioli, Manuela; D'orazio, Melania; Bordi, Matteo; Helmer Citterich, Manuela; Piacentini, Mauro; Di Bartolomeo, Sabrina; Cecconi, Francesco - 01 - Articolo su rivista
rivista: NATURE CELL BIOLOGY (London : Macmillan Magazines Ltd., c1999- London : Nature Publishing Group) pp. 706-706 - issn: 1476-4679 - wos: WOS:000353771500018 (5) - scopus: 2-s2.0-84929469872 (28)

2108/87935 - 2014 - A proteome-wide Domain-centric Perspective on Protein Phosphorylation
Ausiello, Gabriele; Helmer Citterich, Manuela; Gherardini, Pier Federico - 01 - Articolo su rivista
rivista: MOLECULAR & CELLULAR PROTEOMICS (AMERICAN SOCIETY FOR BIOCHEMISTRY AND MOLECULAR BIOLOGY INC, 9650 ROCKVILLE PIKE, BETHESDA, USA, MD, 20814-3996) pp. - - issn: 1535-9476 - wos: WOS:000341785800003 (4) - scopus: 2-s2.0-84907192049 (4)

2108/86848 - 2014 - A novel approach to represent and compare RNA secondary structures
Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. - - issn: 0305-1048 - wos: WOS:000338768100011 (35) - scopus: 2-s2.0-84903148507 (39)

2108/87934 - 2014 - Computational methods for analysis and inference of kinase/inhibitor relationships
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: FRONTIERS IN GENETICS (Lausanne : Frontiers Research Foundation, 2010-) pp. 196-196 - issn: 1664-8021 - wos: WOS:000347091300001 (15) - scopus: 2-s2.0-84906247317 (16)

2108/100014 - 2014 - Exploiting holistic approaches to model specificity in protein phosphorylation
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: FRONTIERS IN GENETICS (Lausanne : Frontiers Research Foundation, 2010-) pp. 315-315 - issn: 1664-8021 - wos: WOS:000347678700001 (11) - scopus: 2-s2.0-84917728240 (13)

2108/86849 - 2014 - Regulation dynamics of Leishmania differentiation: deconvoluting signals and identifying phosphorylation trends
Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: MOLECULAR & CELLULAR PROTEOMICS (AMERICAN SOCIETY FOR BIOCHEMISTRY AND MOLECULAR BIOLOGY INC, 9650 ROCKVILLE PIKE, BETHESDA, USA, MD, 20814-3996) pp. - - issn: 1535-9476 - wos: WOS:000339251300011 (59) - scopus: 2-s2.0-84904103761 (60)

2108/79054 - 2013 - Role of CTCF protein in regulating FMR1 locus transcription
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: PLOS GENETICS (San Francisco, CA : Public Library of Science, c2005-) pp. e1003601-e1003601 - issn: 1553-7390 - wos: WOS:000322321100011 (36) - scopus: 2-s2.0-84880799926 (38)

2108/74773 - 2013 - Peamaclein - a new peach allergenic protein: similarities, differences and misleading features compared to Pru p 3
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: CLINICAL AND EXPERIMENTAL ALLERGY (Oxford: Blackwell Scientific, 1989-) pp. 128-140 - issn: 0954-7894 - wos: WOS:000312884700014 (80) - scopus: 2-s2.0-84871693164 (88)

2108/74774 - 2013 - Nucleos: a web server for the identification of nucleotide-binding sites in protein structures
Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. - - issn: 0305-1048 - wos: WOS:000323603200044 (7) - scopus: 2-s2.0-84883569138 (8)

2108/74769 - 2013 - Phosphoproteomic analysis of differentiating Leishmania parasites reveals unique stage-specific phosphorylation motif
Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: JOURNAL OF PROTEOME RESEARCH (Washington, D.C. : American Chemical Society, c2002-) pp. - - issn: 1535-3893 - wos: WOS:000321605700031 (53) - scopus: 2-s2.0-84879897507 (53)

2108/74775 - 2013 - Exploring the diversity of SPRY/B30.2-mediated interactions
Gherardini, Pier Federico; Helmer Citterich, Manuela; Cesareni, Giovanni - 01 - Articolo su rivista
rivista: TRENDS IN BIOCHEMICAL SCIENCES (Elsevier Trends Journals:An Imprint of Elsevier Science Limited, The Boulevard, Langford Lane, Kidlington, Oxford 0X5 1GB United Kingdom:011 44 1865 843000, 011 44 1865 843699, Fax: 011 44 1865 843010) pp. 38-46 - issn: 0968-0004 - wos: WOS:000314143700006 (71) - scopus: 2-s2.0-84871474752 (56)

2108/74772 - 2013 - Enrichment of Leishmania donovani ATP-binding proteins using a staurosporine capture compound
Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: JOURNAL OF PROTEOMICS () pp. - - issn: 1874-3919 - wos: WOS:000321403500008 (3) - scopus: 2-s2.0-84878906443 (4)

2108/77340 - 2013 - Bioinformatics in Italy: BITS 2012, the ninth annual meeting of the Italian Society of Bioinformatics
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. S1-S1 - issn: 1471-2105 - wos: WOS:000318869400001 (1) - scopus: 2-s2.0-84887200027 (1)

2108/78693 - 2013 - Alternative splicing tends to avoid partial removals of protein-protein interaction sites
Gherardini, Pier Federico; Scalia Tomba, Gianpaolo; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC GENOMICS (London: BioMed Central, 2000-) pp. 379-379 - issn: 1471-2164 - wos: WOS:000321387000001 (3) - scopus: 2-s2.0-84878657158 (4)

2108/79258 - 2013 - DBATE: database of alternative transcripts expression
Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: DATABASE (Oxford: Oxford Journals, 2009- Oxford,UK: Oxford University Press) pp. bat050-bat050 - issn: 1758-0463 - wos: WOS:000322067200001 (10) - scopus: 2-s2.0-84940234571 (11)

2108/77520 - 2013 - webPDBinder: a server for the identification of ligand binding sites on protein structures
Helmer Citterich, Manuela; Ausiello, Gabriele - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. W308-W308-13 - issn: 0305-1048 - wos: WOS:000323603200049 (6) - scopus: 2-s2.0-84883568831 (7)

2108/74771 - 2013 - Experimental and computational methods for the analysis and modeling of signaling networks
Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NEW BIOTECHNOLOGY (Amsterdam : Elsevier Life Science) pp. 327-332 - issn: 1871-6784 - wos: WOS:000317240000012 (3) - scopus: 2-s2.0-84878107994 (3)

2108/77892 - 2012 - Mapping the human phosphatome on growth pathways
Sacco, Francesca; Gherardini, Pier Federico; Paoluzi, Serena; Helmer Citterich, Manuela; Ragnini, Antonella; Castagnoli, Luisa; Cesareni, Giovanni - 01 - Articolo su rivista
rivista: MOLECULAR SYSTEMS BIOLOGY (London : Nature Pub. Group) pp. 603-603 - issn: 1744-4292 - wos: WOS:000308316400003 (20) - scopus: 2-s2.0-84868282067 (19)

2108/69847 - 2012 - B-Pred, a structure based B-cell epitopes prediction server
Giaco', Luciano; Amicosante, Massimo; Fraziano, Maurizio; Gherardini, Pier Federico; Ausiello, Gabriele; Helmer Citterich, Manuela; Colizzi, Vittorio; Cabibbo, Andrea - 01 - Articolo su rivista
rivista: ADVANCES AND APPLICATIONS IN BIOINFORMATICS AND CHEMISTRY ([Auckland, N.Z. : Dove Medical Press]) pp. 11-21 - issn: 1178-6949 - wos: (0) - scopus: 2-s2.0-84878890474 (16)

2108/303167 - 2012 - Modeling gene regulatory network motifs using Statecharts
Fioravanti, Fabio; Helmer Citterich, Manuela; Nardelli, Enrico - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. - - issn: 1471-2105 - wos: WOS:000303936400021 (9) - scopus: 2-s2.0-84865127111 (11)

2108/74627 - 2012 - Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities
Gherardini, Pier Federico; Helmer Citterich, Manuela; Ausiello, Gabriele - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. - - issn: 1471-2105 - wos: WOS:000303936400018 (16) - scopus: 2-s2.0-84864936114 (16)

2108/74770 - 2012 - Identification of nucleotide-binding sites in protein structures: a novel approach based on nucleotide modularity
Gherardini, Pier Federico; Helmer Citterich, Manuela; Ausiello, Gabriele - 01 - Articolo su rivista
rivista: PLOS ONE (San Francisco, CA : Public Library of Science) pp. e50240-e50240 - issn: 1932-6203 - wos: WOS:000311885800056 (6) - scopus: 2-s2.0-84870276089 (6)

2108/73447 - 2012 - What have proteomics taught us about Leishmania development?
Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: PARASITOLOGY (London: Cambridge University Press, 1908-) pp. 1146-1157 - issn: 0031-1820 - wos: WOS:000308382200005 (29) - scopus: 2-s2.0-84864999160 (28)

2108/74768 - 2012 - Deciphering a global network of functionally associated post-translational modifications
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: MOLECULAR SYSTEMS BIOLOGY (London : Nature Pub. Group) pp. - - issn: 1744-4292 - wos: WOS:000307174800008 (190) - scopus: 2-s2.0-84864184970 (199)

2108/77068 - 2012 - Bioinformatics in Italy: BITS2011, the Eighth Annual Meeting of the Italian Society of Bioinformatics
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. I1-I1 - issn: 1471-2105 - wos: WOS:000303936400001 (0) - scopus: 2-s2.0-84865140691 (0)

2108/74767 - 2012 - Modeling gene regulatory network motifs using Statecharts
Helmer Citterich, Manuela; Nardelli, Enrico - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. - - issn: 1471-2105 - wos: WOS:000303936400021 (9) - scopus: 2-s2.0-84865127111 (11)

2108/14876 - 2011 - Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites
Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. D268-D271 - issn: 0305-1048 - wos: WOS:000285831700045 (37) - scopus: 2-s2.0-78651323535 (39)

2108/15046 - 2011 - Phosphate binding sites identification in protein structures
Gherardini, Pier Federico; Helmer Citterich, Manuela; Ausiello, Gabriele - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. 1231-42- - issn: 0305-1048 - wos: WOS:000288019400013 (14) - scopus: 2-s2.0-79952351456 (15)

2108/15040 - 2011 - Phosfinder: a web server for the identification of phosphate-binding sites on protein structures
Gherardini, Pier Federico; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. - - issn: 0305-1048 - wos: WOS:000292325300045 (12) - scopus: 2-s2.0-79959938469 (12)

2108/42697 - 2011 - PhosTryp: a phosphorylation sites predictor specific for parasitic protozoa of the family trypanosomatidae
Gherardini, Pier Federico; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC GENOMICS (London: BioMed Central, 2000-) pp. 614- - issn: 1471-2164 - wos: WOS:000300735700001 (18) - scopus: 2-s2.0-83655180753 (19)

2108/15198 - 2011 - From sequence to structural analysis in protein phosphorylation motifs
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: FRONTIERS IN BIOSCIENCE ([Alberton, NY] : Frontiers in Bioscience, 2009-) pp. 1261-1275 - issn: 1945-0494 - wos: WOS:000290093700004 (18) - scopus: 2-s2.0-78651272733 (18)

2108/15203 - 2011 - Adaptation of a 2D in-gel kinase assay to trace phosphotransferase activities in the human pathogen Leishmania donovani
Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: JOURNAL OF PROTEOMICS () pp. - - issn: 1874-3919 - wos: WOS:000295149000014 (7) - scopus: 2-s2.0-80051673320 (7)

2108/15086 - 2010 - Superpose3D: a local structural comparison program that allows for user-defined structure representations
Gherardini, Pier Federico; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: PLOS ONE (San Francisco, CA : Public Library of Science) pp. e11988- - issn: 1932-6203 - wos: WOS:000280605400021 (14) - scopus: 2-s2.0-77957760751 (12)

2108/14881 - 2010 - ELM: the status of the 2010 eukaryotic linear motif resource
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. D167-D180 - issn: 0305-1048 - wos: WOS:000276399100027 (199) - scopus: 2-s2.0-71749098088 (210)

2108/15047 - 2010 - Modular architecture of nucleotide-binding pockets
Gherardini, Pier Federico; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. 3809-3816 - issn: 0305-1048 - wos: WOS:000279188800035 (25) - scopus: 2-s2.0-77954364272 (24)

2108/14879 - 2010 - Cyclosporin A treatment of Leishmania donovani reveals stage-specific functions of cyclophilins in parasite proliferation and viability
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: PLOS NEGLECTED TROPICAL DISEASES (San Francisco, CA : Public Library of Science) pp. E729- - issn: 1935-2727 - wos: WOS:000279341300034 (33) - scopus: 2-s2.0-77956997367 (35)

2108/14880 - 2010 - Identification of Leishmania-specific protein phosphorylation sites by LC-ESI-MS/MS and comparative genomics analyses
Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: PROTEOMICS (Wiley-VCH Verlag GmBH:PO Box 101161, D 69451 Weinheim Germany:011 49 6201 606147, EMAIL: service@wiley-vch.de, INTERNET: http://www.wiley-vch.de, Fax: 011 49 6201 606328) pp. 3868-3883 - issn: 1615-9853 - wos: WOS:000284045300009 (30) - scopus: 2-s2.0-78049391406 (38)

2108/15139 - 2009 - A structure filter for the Eukaryotic Linear Motif Resource
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. 351- - issn: 1471-2105 - wos: WOS:000271764300001 (34) - scopus: 2-s2.0-71749106147 (40)

2108/15049 - 2009 - Structural motifs recurring in different folds recognize the same ligand fragments
Ausiello, Gabriele; Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. 182- - issn: 1471-2105 - wos: WOS:000267597100001 (11) - scopus: 2-s2.0-67649891099 (12)

2108/15050 - 2008 - FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures
Ausiello, Gabriele; Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. S2- - issn: 1471-2105 - wos: WOS:000259022900002 (27) - scopus: 2-s2.0-43349087464 (30)

2108/15192 - 2008 - Structure-based function prediction: approaches and applications
Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BRIEFINGS IN FUNCTIONAL GENOMICS & PROTEOMICS (-London : Henry Stewart, 2002-2009. -Oxford : Oxford Journals) pp. 291-302 - issn: 1473-9550 - wos: (0) - scopus: 2-s2.0-53249156104 (63)

2108/14722 - 2007 - Phospho3D: a database of three-dimensional structures of protein phosphorylation sites
Ausiello, Gabriele; Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. D229-D231 - issn: 0305-1048 - wos: WOS:000243494600047 (40) - scopus: 2-s2.0-33846097128 (41)

2108/15200 - 2007 - Convergent evolution of enzyme active sites is not a rare phenomenon
Gherardini, Pier Federico; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: JOURNAL OF MOLECULAR BIOLOGY (-LONDON, ENGLAND: ACADEMIC PRESS LTD ELSEVIER SCIENCE LTD, -London; New York: Academic Press.) pp. 817-845 - issn: 0022-2836 - wos: WOS:000249494800020 (89) - scopus: 2-s2.0-34548241399 (94)

2108/15215 - 2007 - False occurrences of functional motifs in protein sequences highlight evolutionary constraints
Gherardini, Pier Federico; Ausiello, Gabriele; Scalia Tomba, Gianpaolo; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. 68- - issn: 1471-2105 - wos: WOS:000244856400001 (7) - scopus: 2-s2.0-33947389235 (9)

2108/15337 - 2007 - Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites
Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. S24- - issn: 1471-2105 - wos: WOS:000246602100024 (14) - scopus: 2-s2.0-34248185418 (17)

2108/15191 - 2007 - SH3-Hunter: discovery of SH3 domain interaction sites in proteins
Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. W451-W454 - issn: 0305-1048 - wos: WOS:000255311500085 (29) - scopus: 2-s2.0-34547571029 (30)

2108/15194 - 2007 - 3dLOGO: a web server for the identification, analysis and use of conserved protein substructures
Gherardini, Pier Federico; Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. W416-W419 - issn: 0305-1048 - wos: WOS:000255311500078 (4) - scopus: 2-s2.0-34547561586 (6)

2108/15338 - 2006 - A novel structure-based encoding for machine-learning applied to the inference of SH3 domain specificity
Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BIOINFORMATICS (-Oxford : Oxford University Press, 1998-) pp. 2333-2339 - issn: 1367-4803 - wos: WOS:000241271000004 (21) - scopus: 2-s2.0-33750030012 (21)

2108/15339 - 2005 - PDBFun: mass selection and fast comparison of annotated PDB residues
Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. W133-W137 - issn: 0305-1048 - wos: WOS:000230271400024 (23) - scopus: 2-s2.0-23144463514 (31)

2108/15340 - 2005 - Seq2Struct: a resource for establishing sequence-structure links
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BIOINFORMATICS (-Oxford : Oxford University Press, 1998-) pp. 551-553 - issn: 1367-4803 - wos: WOS:000227127000020 (8) - scopus: 2-s2.0-14644435044 (8)

2108/15341 - 2005 - Functional annotation by identification of local surface similarities: a novel tool for structural genomics
Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. 194- - issn: 1471-2105 - wos: WOS:000231423000001 (30) - scopus: 2-s2.0-25444441067 (31)

2108/15262 - 2005 - A neural strategy for the inference of SH3 domain-peptide interaction specificity
Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. S13- - issn: 1471-2105 - wos: WOS:000236064600013 (8) - scopus: 2-s2.0-33947315301 (10)

2108/15261 - 2005 - Query3d: a new method for high-throughput analysis of functional residues in protein structures
Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. S5- - issn: 1471-2105 - wos: WOS:000236064600005 (39) - scopus: 2-s2.0-33947201695 (50)

2108/14891 - 2004 - SURFACE: a database of protein surface regions for functional annotation
Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. D240-D244 - issn: 0305-1048 - wos: WOS:000188079000055 (43) - scopus: 2-s2.0-0346494936 (54)

2108/14892 - 2004 - A structural study for the optimisation of functional motifs encoded in protein sequences
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. 50- - issn: 1471-2105 - wos: WOS:000222226000002 (6) - scopus: 2-s2.0-2942549126 (7)

2108/55788 - 2004 - The Internet for Molecular and Cellular Biologists, Second Edition
Helmer Citterich, Manuela; Cabibbo, Andrea - 04 - Monografia

2108/15520 - 2003 - Searching the MINT database for protein interaction information
Cesareni, Giovanni; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: CURRENT PROTOCOLS IN BIOINFORMATICS (New York : Wiley, c2003-) pp. Unit 8.5- - issn: 1934-3396 - wos: (0) - scopus: 2-s2.0-43349087727 (3)

2108/15523 - 2003 - Introduzione alla Bioinformatica
Helmer Citterich, Manuela - 04 - Monografia

2108/14890 - 2003 - iSPOT: A web tool to infer the interaction specificity of families of protein modules
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. 3709-3711 - issn: 0305-1048 - wos: WOS:000183832900091 (29) - scopus: 2-s2.0-0041620239 (35)

2108/14884 - 2003 - Development of computational tools for the inference of protein interaction specificity rules and functional annotation using structural information
Ausiello, Gabriele; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: COMPARATIVE AND FUNCTIONAL GENOMICS () pp. 416-419 - issn: 1531-6912 - wos: WOS:000185279400008 (1) - scopus: 2-s2.0-0042386403 (1)

2108/14889 - 2003 - ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins
Ausiello, Gabriele; Cesareni, Giovanni; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford : Oxford University Press) pp. 3625-3630 - issn: 1362-4962 - wos: WOS:000183832900073 (496) - scopus: 2-s2.0-0042622252 (526)

2108/15524 - 2002 - The Internet for Cell and Molecular Biologists
Cabibbo, Andrea; Helmer Citterich, Manuela - 04 - Monografia

2108/14878 - 2002 - The SH3 domain of nebulin binds selectively to type II peptides: theoretical prediction and experimental validation
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: JOURNAL OF MOLECULAR BIOLOGY (-LONDON, ENGLAND: ACADEMIC PRESS LTD ELSEVIER SCIENCE LTD, -London; New York: Academic Press.) pp. 305-315 - issn: 0022-2836 - wos: WOS:000174108100009 (21) - scopus: 2-s2.0-0036297653 (21)

2108/15521 - 2002 - MINT: a Molecular INTeraction database
Ausiello, Gabriele; Helmer Citterich, Manuela; Cesareni, Giovanni - 01 - Articolo su rivista
rivista: FEBS LETTERS (Elsevier BV:PO Box 211, 1000 AE Amsterdam Netherlands:011 31 20 4853757, 011 31 20 4853642, 011 31 20 4853641, EMAIL: nlinfo-f@elsevier.nl, INTERNET: http://www.elsevier.nl, Fax: 011 31 20 4853598) pp. 135-140 - issn: 0014-5793 - wos: WOS:000174208800022 (537) - scopus: 2-s2.0-0037138406 (631)

2108/15516 - 2001 - iSPOT: a web tool for the analysis and recognition of protein domain specificity
Cesareni, Giovanni; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: COMPARATIVE AND FUNCTIONAL GENOMICS () pp. 314-318 - issn: 1531-6912 - wos: WOS:000171940700009 (8) - scopus: 2-s2.0-0035168032 (9)

2108/14877 - 2001 - Distinct binding specificity of the multiple PDZ domains of INADL, a human protein with homology to INAD from Drosophila melanogaster
Helmer Citterich, Manuela; Cesareni, Giovanni - 01 - Articolo su rivista
rivista: THE JOURNAL OF BIOLOGICAL CHEMISTRY (American Society for Biochemistry and Molecular Biology:9650 Rockville Pike:Bethesda, MD 20814:(301)530-7145, EMAIL: asbmb@asbmb.faseb.org, INTERNET: http://www.faseb.org/asbmb, Fax: (301)571-1824) pp. 42122-42130 - issn: 0021-9258 - wos: WOS:000172450400079 (52) - scopus: 2-s2.0-0035834678 (60)

2108/15495 - 2000 - Three-dimensional view of the surface motif associated with the P-loop structure: cis and trans cases of convergent evolution
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: JOURNAL OF MOLECULAR BIOLOGY (-LONDON, ENGLAND: ACADEMIC PRESS LTD ELSEVIER SCIENCE LTD, -London; New York: Academic Press.) pp. 455-465 - issn: 0022-2836 - wos: WOS:000165270900002 (68) - scopus: 2-s2.0-0034602364 (71)

2108/15458 - 2000 - SH3-SPOT: an algorithm to predict preferred ligands to different members of the SH3 gene family
Cesareni, Giovanni; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: JOURNAL OF MOLECULAR BIOLOGY (-LONDON, ENGLAND: ACADEMIC PRESS LTD ELSEVIER SCIENCE LTD, -London; New York: Academic Press.) pp. 313-328 - issn: 0022-2836 - wos: WOS:000086831200012 (72) - scopus: 2-s2.0-0034724569 (73)

2108/15476 - 2000 - Identification of a putative binding site for negatively charged surfaces in the fibronectin type II domain of human factor XII--an immunochemical and homology modeling approach
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: THROMBOSIS AND HAEMOSTASIS (Stuttgart: Thieme Stuttgart: Schattauer) pp. 1057-1065 - issn: 0340-6245 - wos: WOS:000166080600021 (44) - scopus: 2-s2.0-0034533548 (49)

2108/15497 - 2000 - Protein surface similarities: a survey of methods to describe and compare protein surfaces
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: CELLULAR AND MOLECULAR LIFE SCIENCES (Birkhaeuser Verlag AG:Viaduktstrasse 42-44, CH 4051 Basel Switzerland:011 41 61 2050707, EMAIL: subscriptions@birkhauser.ch, INTERNET: http://www.birkhauser.ch, Fax: 011 41 61 2050792) pp. 1970-1977 - issn: 1420-682X - wos: WOS:000166644300016 (51) - scopus: 2-s2.0-0034489092 (57)

2108/15389 - 1998 - Three-dimensional profiles: a new tool to identify protein surface similarities
Ausiello, Gabriele; Cesareni, Giovanni; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: JOURNAL OF MOLECULAR BIOLOGY (-LONDON, ENGLAND: ACADEMIC PRESS LTD ELSEVIER SCIENCE LTD, -London; New York: Academic Press.) pp. 1211-1221 - issn: 0022-2836 - wos: WOS:000077467300032 (35) - scopus: 2-s2.0-0032509148 (42)

2108/15478 - 1998 - Design and properties of a Myc derivative that efficiently homodimerizes
Helmer Citterich, Manuela; Cesareni, Giovanni - 01 - Articolo su rivista
rivista: ONCOGENE (Macmillan Magazines Limited:Porters South Crinian Street, London N1 9XW United Kingdom:011 44 207 8334000, 011 44 171 8434982, Fax: 011 44 207 812358) pp. 2463-2472 - issn: 0950-9232 - wos: WOS:000076927300006 (153) - scopus: 2-s2.0-0032511987 (161)

2108/15517 - 1998 - Structural studies on an inhibitory antibody against Thermus aquaticus DNA polymerase suggest mode of inhibition
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: PROTEIN ENGINEERING (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485) pp. 79-86 - issn: 0269-2139 - wos: WOS:000073239800002 (10) - scopus: 2-s2.0-0031894376 (9)

2108/15477 - 1997 - Correlated mutations contain information about protein-protein interaction
Helmer Citterich, Manuela; Ausiello, Gabriele - 01 - Articolo su rivista
rivista: JOURNAL OF MOLECULAR BIOLOGY (-LONDON, ENGLAND: ACADEMIC PRESS LTD ELSEVIER SCIENCE LTD, -London; New York: Academic Press.) pp. 511-523 - issn: 0022-2836 - wos: WOS:A1997XU53600003 (401) - scopus: 2-s2.0-0030821675 (440)

2108/15039 - 1997 - ESCHER: a new docking procedure applied to the reconstruction of protein tertiary structure
Ausiello, Gabriele; Cesareni, Giovanni; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: PROTEINS (John Wiley & Sons Incorporated:Customer Service, 111 River Street:Hoboken, NJ 07030:(800)225-5945, (201)748-6000, EMAIL: societyinfo@wiley.com, INTERNET: http://www.wiley.com, Fax: (212)748-6551) pp. 556-567 - issn: 0887-3585 - wos: WOS:A1997XP46300009 (63) - scopus: 2-s2.0-0030855390 (74)

2108/15518 - 1997 - Homology modeling of Neurospora crassa geranylgeranyl pyrophosphate synthase: structural interpretation of mutant phenotypes
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: PROTEIN ENGINEERING (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485) pp. 1047-1055 - issn: 0269-2139 - wos: WOS:000071300700007 (9) - scopus: 2-s2.0-0031468963 (9)

2108/15499 - 1996 - HMG1 interacts with HOX proteins and enhances their DNA binding and transcriptional activation
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: EMBO JOURNAL (attuale: NATURE PUBLISHING GROUP, 345 PARK AVENUE SOUTH, NEW YORK, USA, NY, 10010-1707 Precedente: Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485) pp. 4981-4991 - issn: 0261-4189 - wos: WOS:A1996VL09500021 (212) - scopus: 2-s2.0-0029811475 (220)

2108/15459 - 1995 - Modelling antibody-antigen interactions: ferritin as a case study
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: MOLECULAR IMMUNOLOGY (-Oxford :Elsevier Science Limited -Oxford; New York: Pergamon Press.) pp. 1001-1010 - issn: 0161-5890 - wos: WOS:A1995TA13900009 (14) - scopus: 2-s2.0-0028821991 (16)

2108/15515 - 1994 - Molecular models and structural comparisons of native and mutant class I filamentous bacteriophages Ff (fd, f1, M13), If1 and IKe
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: JOURNAL OF MOLECULAR BIOLOGY (-LONDON, ENGLAND: ACADEMIC PRESS LTD ELSEVIER SCIENCE LTD, -London; New York: Academic Press.) pp. 260-286 - issn: 0022-2836 - wos: WOS:A1994MR30400027 (186) - scopus: 2-s2.0-0028058295 (203)

2108/15519 - 1994 - PUZZLE: a new method for automated protein docking based on surface shape complementarity
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: JOURNAL OF MOLECULAR BIOLOGY (-LONDON, ENGLAND: ACADEMIC PRESS LTD ELSEVIER SCIENCE LTD, -London; New York: Academic Press.) pp. 1021-1031 - issn: 0022-2836 - wos: WOS:A1994MT70100015 (81) - scopus: 2-s2.0-0027958638 (88)

2108/15522 - 1991 - Control of ColE1 plasmid replication by antisense RNA
Cesareni, Giovanni; Helmer Citterich, Manuela; Castagnoli, Luisa - 01 - Articolo su rivista
rivista: TRENDS IN GENETICS (Elsevier Applied Science:An Imprint of Elsevier Science Ltd, The Boulevard, Langford Lane, Kidlington Oxford OX5 1GB United Kingdom:011 44 1865 843000, 011 44 1865 843699, EMAIL: nlinfo-f@elsevier.nl OR usinfo-f@elsevier.com OR forinfo-kyf04035@niftyserve.or.jp, INTERNET: http://www.elsevier.nl/, Fax: 011 44 1865 843010) pp. 230-235 - issn: 0168-9525 - wos: WOS:A1991FR77600006 (99) - scopus: 2-s2.0-0025731898 (104)

2108/52385 - 1991 - Control of ColE1 plasmid replication by antisense RNA
Cesareni, Giovanni; Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: TRENDS IN GENETICS (Elsevier Applied Science:An Imprint of Elsevier Science Ltd, The Boulevard, Langford Lane, Kidlington Oxford OX5 1GB United Kingdom:011 44 1865 843000, 011 44 1865 843699, EMAIL: nlinfo-f@elsevier.nl OR usinfo-f@elsevier.com OR forinfo-kyf04035@niftyserve.or.jp, INTERNET: http://www.elsevier.nl/, Fax: 011 44 1865 843010) pp. 230-235 - issn: 0168-9525 - wos: WOS:A1991FR77600006 (99) - scopus: 2-s2.0-0025731898 (104)

2108/15498 - 1988 - Control of ColE1 replication: low affinity specific binding of Rop (Rom) to RNAI and RNAII
Helmer Citterich, Manuela; Cesareni, Giovanni - 01 - Articolo su rivista
rivista: EMBO JOURNAL (attuale: NATURE PUBLISHING GROUP, 345 PARK AVENUE SOUTH, NEW YORK, USA, NY, 10010-1707 Precedente: Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485) pp. 557-566 - issn: 0261-4189 - wos: (0) - scopus: 2-s2.0-0023958576 (46)

2108/15479 - 1985 - RNA processing in Neurospora crassa mitochondria: transfer RNAs punctuate a large precursor transcript
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: EMBO JOURNAL (attuale: NATURE PUBLISHING GROUP, 345 PARK AVENUE SOUTH, NEW YORK, USA, NY, 10010-1707 Precedente: Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485) pp. 197-204 - issn: 0261-4189 - wos: (0) - scopus: 2-s2.0-0021994414 (42)

2108/15496 - 1983 - Nucleotide sequence and intron structure of the apocytochrome b gene of Neurospora crassa mitochondria
Helmer Citterich, Manuela - 01 - Articolo su rivista
rivista: EMBO JOURNAL (attuale: NATURE PUBLISHING GROUP, 345 PARK AVENUE SOUTH, NEW YORK, USA, NY, 10010-1707 Precedente: Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485) pp. 1235-1242 - issn: 0261-4189 - wos: (0) - scopus: 2-s2.0-1542671272 (49)

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