LUANA LICATA

Researcher


email: luana.licata@uniroma2.it
phone: 06 7259 4315
building: SOGENE
room: 315

Education and training

1999  D.Sci. Master Degree in Biology, University of Palermo, Italy

2004 Ph.D. in Biochemistry, Dept. of Structural Biology, Max Plank Institute of Biophysics, Frankfurt am Main, Germany issued by the Johann Wolfgang Goethe University, Frankfurt am Main, Germany.

Employment

1999 Visiting Scientist at the Children’s Hospital of Pittsburgh, Rangos Research Centre, Pittsburgh,

Pennsylvania, United States.

2006 Consultant at the Research and Technology Development Service (SDRR), Food & Agriculture

Organisation of the United Nations (FAO), Rome

2006-2007 Post Doc Position in Bioinformatics, Dept. of Biology, University of Rome Tor Vergata,

Rome (Italy)

2008-2009 Consultant at the Agriculture Department, Crop and Grassland service (AGPC), Food &

Agriculture Organisation of the United Nations (FAO), Rome.

2008-2018 Research fellow position, Dept. of Biology, University of  Rome Tor Vergata, Rome (Italy), 2019-2022 RTDA, Dept. of Biology, University of Rome Tor Vergata

2022 Senior project coordinator, Human technopole, Milano

2022-present Assistant Professor, Dept. of Biology, University of Rome Tor Vergata.

Teaching

2017-present      Bioinformatic tools for the study and analysis of biological “Big Data”: from genomics to

proteomics, AAS, Corso di Laurea Magistrale in Biologia Cellulare e Molecolare and Corso di Laurea

Magistrale in Bioinformatics.

2023-present      Principles and data mining in human genetics, Corso di Laurea Magistrale in Biologia

Cellulare e Molecolare

Research interests

My scientific research activity focuses on the analysis of molecular interactions, both physical and causal, with the aim of understanding molecular mechanisms in various pathological contexts, such as cancer, infectious diseases, rare diseases and neurodevelopmental diseases. In particular, on the study of the impact of pathogenic variants on the function of proteins and their interactions, in order to identify the relationships between genotype and phenotype and characterize the molecular mechanisms underlying diseases to identify possible therapeutic strategies.

I am the scientific coordinator of the bioinformatic resource MINT, the Molecular INTeraction database (ELIXIR Core Data Resources and Global Core Biodata Resources) that provides standardized data on the physical interactions between biomolecules (proteins, nucleic acids, biomolecules and protein complexes).

I co-coordinate SIGNOR database, a resource that annotate causal and pathway relationships involving different biological entities (proteins, complexes, miRNAs, small molecules) and functionally link disease-associated genes via causal relationships.




Research products

2108/325246 - 2023 - SIGNOR 3.0, the SIGnaling network open resource 3.0: 2022 update
Iannuccelli, Marta; Castagnoli, Luisa; Licata, Luana; Perfetto, Livia - 01 - Articolo su rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford : Oxford University Press) pp. 631-637 - issn: 1362-4962 - wos: WOS:000868392800001 (35) - scopus: 2-s2.0-85159634044 (36)

2108/325306 - 2023 - Resources and tools for rare disease variant interpretation
Licata, Luana - 01 - Articolo su rivista
paper: FRONTIERS IN MOLECULAR BIOSCIENCES (Lausanne : Frontiers Media S.A., 2014-) pp. 1169109- - issn: 2296-889X - wos: WOS:001000438900001 (5) - scopus: 2-s2.0-85160058924 (4)

2108/325323 - 2023 - Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work
Licata, Luana - 01 - Articolo su rivista
paper: JOURNAL OF PROTEOME RESEARCH (Washington, D.C. : American Chemical Society, c2002-) pp. 287-301 - issn: 1535-3907 - wos: WOS:000918368600001 (18) - scopus: 2-s2.0-85146633740 (21)

2108/325364 - 2022 - IMEx Databases: Displaying Molecular Interactions into a Single, Standards-Compliant Dataset
Licata, Luana - 03 - Contributo in libro
book: Data Mining Techniques for the Life Sciences - (978-1-0716-2094-6)

2108/325243 - 2022 - A Resource to Infer Molecular Paths Linking Cancer Mutations to Perturbation of Cell Metabolism
Iannuccelli, Marta; Licata, Luana; Castagnoli, Luisa; Perfetto, Livia - 01 - Articolo su rivista
paper: FRONTIERS IN MOLECULAR BIOSCIENCES (Lausanne : Frontiers Media S.A., 2014-) pp. 893256- - issn: 2296-889X - wos: WOS:000805011900001 (2) - scopus: 2-s2.0-85131520980 (2)

2108/325248 - 2022 - The IntAct database: efficient access to fine-grained molecular interaction data
Perfetto, Livia; Licata, Luana; Iannuccelli, Marta; Panni, Simona - 01 - Articolo su rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford : Oxford University Press) pp. 648-653 - issn: 1362-4962 - wos: WOS:000743496700078 (110) - scopus: 2-s2.0-85123044845 (115)

2108/325263 - 2022 - The gene regulation knowledge commons: the action area of GREEKC
Licata, Luana; Panni, Simona; Perfetto, Livia - 01 - Articolo su rivista
paper: BIOCHIMICA ET BIOPHYSICA ACTA. GENE REGULATORY MECHANISMS (Amsterdam : Elsevier) pp. 194768- - issn: 1876-4320 - wos: WOS:000727751500001 (3) - scopus: 2-s2.0-85120502486 (4)

2108/325244 - 2022 - The RD-Connect Genome-Phenome Analysis Platform: Accelerating diagnosis, research, and gene discovery for rare diseases
Licata, Luana - 01 - Articolo su rivista
paper: HUMAN MUTATION ([New York, N.Y.] : Wiley-Liss, Inc., c1992-) pp. 717-733 - issn: 1098-1004 - wos: WOS:000797970100009 (26) - scopus: 2-s2.0-85129988911 (29)

2108/325283 - 2022 - The Intricacy of the Viral-Human Protein Interaction Networks: Resources, Data, and Analyses
Iannuccelli, Marta; Licata, Luana - 01 - Articolo su rivista
paper: FRONTIERS IN MICROBIOLOGY (Lausanne : Frontiers Research Foundation, 2010-) pp. 849781- - issn: 1664-302X - wos: WOS:000811074000001 (3) - scopus: 2-s2.0-85129522758 (3)

2108/266664 - 2021 - Integrating Patient-Specific Information into Logic Models of Complex Diseases: Application to Acute Myeloid Leukemia
Iannuccelli, Marta; Licata, Luana; Perfetto, Livia; Castagnoli, Luisa; Cesareni, Giovanni; Sacco, Francesca - 01 - Articolo su rivista
paper: JOURNAL OF PERSONALIZED MEDICINE (Basel: MDPI AG, 2011-) pp. - - issn: 2075-4426 - wos: WOS:000622705700001 (3) - scopus: 2-s2.0-85101196769 (4)

2108/288561 - 2021 - A Resource for the Network Representation of Cell Perturbations Caused by SARS-CoV-2 Infection
Perfetto, Livia; Micarelli, Elisa; Iannuccelli, Marta; Fuoco, Claudia; Paoluzi, Serena; Castagnoli, Luisa; Cesareni, Giovanni; Licata, Luana; Sacco, Francesca - 01 - Articolo su rivista
paper: GENES (Basel : Molecular Diversity Preservation International) pp. 450- - issn: 2073-4425 - wos: WOS:000633658000001 (5) - scopus: 2-s2.0-85103098209 (6)

2108/288565 - 2021 - COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms (vol 17, e10387, 2021)
Conti, Maria Cristina; Licata, Luana; Iannuccelli, Marta; Sacco, Francesca; Soliman, Sherif - 01 - Articolo su rivista
paper: MOLECULAR SYSTEMS BIOLOGY (London : Nature Pub. Group) pp. e10851- - issn: 1744-4292 - wos: WOS:000735404400001 (44) - scopus: 2-s2.0-85122102471 (9)

2108/308476 - 2021 - COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms
Conti, Maria Cristina; Licata, Luana; Iannuccelli, Marta; Sacco, Francesca; Soliman, Sherif - 01 - Articolo su rivista
paper: MOLECULAR SYSTEMS BIOLOGY (London : Nature Pub. Group) pp. - - issn: 1744-4292 - wos: WOS:000711353900001 (44) - scopus: 2-s2.0-85118262224 (47)

2108/255188 - 2020 - The minimum information about a molecular interaction CAusal STatement (MI2CAST)
Licata, Luana; Panni, Simona; Perfetto, Livia - 01 - Articolo su rivista
paper: BIOINFORMATICS (-Oxford : Oxford University Press, 1998-) pp. 5712-5718 - issn: 1367-4803 - wos: WOS:000642297800023 (8) - scopus: 2-s2.0-85094135160 (11)

2108/325363 - 2020 - Using the MINT Database to Search Protein Interactions
Calderone, Alberto; Iannuccelli, Marta; Licata, Luana - 01 - Articolo su rivista
paper: CURRENT PROTOCOLS IN BIOINFORMATICS (New York : Wiley, c2003-) pp. - - issn: 1934-3396 - wos: (0) - scopus: 2-s2.0-85081121721 (21)

2108/234347 - 2020 - CancerGeneNet: linking driver genes to cancer hallmarks
Iannuccelli, Marta; Micarelli, Elisa; Palma, Alessandro; Perfetto, Livia; Castagnoli, Luisa; Licata, Luana; Cesareni, Giovanni - 01 - Articolo su rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford : Oxford University Press) pp. D416-D421 - issn: 1362-4962 - wos: WOS:000525956700058 (28) - scopus: 2-s2.0-85077665376 (29)

2108/234349 - 2020 - SIGNOR 2.0, the SIGnaling Network Open Resource 2.0: 2019 update
Licata, Luana; Iannuccelli, Marta; Palma, Alessandro; Micarelli, Elisa; Perfetto, Livia; Calderone, Alberto; Castagnoli, Luisa; Cesareni, Giovanni - 01 - Articolo su rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford : Oxford University Press) pp. D504-D510 - issn: 1362-4962 - wos: WOS:000525956700070 (160) - scopus: 2-s2.0-85077669355 (173)

2108/263795 - 2020 - The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions
Perfetto, Livia; Iannuccelli, Marta; Licata, Luana; Panni, Simona; Cesareni, Giovanni - 01 - Articolo su rivista
paper: DATABASE (Oxford: Oxford Journals, 2009- Oxford,UK: Oxford University Press) pp. - - issn: 1758-0463 - wos: WOS:000597233700001 (24) - scopus: 2-s2.0-85096407251 (27)

2108/263791 - 2020 - Towards a unified open access dataset of molecular interactions
Iannuccelli, Marta; Licata, Luana; Panni, Simona; Perfetto, Livia - 01 - Articolo su rivista
paper: NATURE COMMUNICATIONS (London: Nature Publishing Group-Springer Nature) pp. 6144- - issn: 2041-1723 - wos: WOS:000598900500001 (0) - scopus: 2-s2.0-85097001859 (21)

2108/229788 - 2019 - Myo-REG: A portal for signaling interactions in muscle regeneration
Fuoco, Claudia; Gargioli, Cesare; Iannuccelli, Marta; Licata, Luana; Micarelli, Elisa; Paoluzi, Serena; Perfetto, Livia; Reggio, Alessio; Rosina, Marco; Sacconi, Fabio Enrico; Castagnoli, Luisa; Cesareni, Giovanni - 01 - Articolo su rivista
paper: FRONTIERS IN PHYSIOLOGY (Lausanne: Frontiers Research Foundation, 2010-) pp. 1216- - issn: 1664-042X - wos: WOS:000488077300001 (7) - scopus: 2-s2.0-85073006415 (6)

2108/241743 - 2019 - Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set
Perfetto, Livia; Panni, Simona; Iannuccelli, Marta; Licata, Luana; Cesareni, Giovanni - 01 - Articolo su rivista
paper: NATURE COMMUNICATIONS (London: Nature Publishing Group-Springer Nature) pp. 10- - issn: 2041-1723 - wos: WOS:000454679900010 (43) - scopus: 2-s2.0-85059496699 (59)

2108/241727 - 2019 - CausalTAB: The PSI-MITAB 2.8 updated format for signalling data representation and dissemination
Perfetto, Livia; Cesareni, Giovanni; Licata, Luana - 01 - Articolo su rivista
paper: BIOINFORMATICS ([Oxford] : Oxford University Press) pp. 3779-3785 - issn: 1367-4811 - wos: WOS:000499322300029 (20) - scopus: 2-s2.0-85072698050 (23)

2108/241930 - 2019 - Myo-REG: A portal for signaling interactions in muscle regeneration
Palma, Alessandro; Fuoco, Claudia; Gargioli, Cesare; Iannuccelli, Marta; Licata, Luana; Micarelli, Elisa; Paoluzi, Serena; Perfetto, Livia; Petrilli, Lucia Lisa; Reggio, Alessio; Rosina, Marco; Sacco, Francesca; Castagnoli, Luisa; Cesareni, Giovanni - 01 - Articolo su rivista
paper: FRONTIERS IN PHYSIOLOGY (Lausanne: Frontiers Research Foundation, 2010-) pp. 1216- - issn: 1664-042X - wos: WOS:000488077300001 (7) - scopus: 2-s2.0-85073006415 (6)

2108/234331 - 2018 - DISNOR: A disease network open resource
Calderone, Alberto; Iannuccelli, Marta; Licata, Luana; Castagnoli, Luisa; Cesareni, Giovanni; Perfetto, Livia - 01 - Articolo su rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford : Oxford University Press) pp. D527-D534 - issn: 1362-4962 - wos: WOS:000419550700081 (28) - scopus: 2-s2.0-85040932140 (33)

2108/241766 - 2018 - Encompassing new use cases - Level 3.0 of the HUPO-PSI format for molecular interactions
Ceol, Arnaud; Cesareni, Giovanni; Licata, Luana; Panni, Simona - 01 - Articolo su rivista
paper: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. 134- - issn: 1471-2105 - wos: WOS:000431023300009 (35) - scopus: 2-s2.0-85045277433 (40)

2108/241771 - 2016 - The MintAct project and molecular interaction databases
Licata, Luana - 03 - Contributo in libro
book: Data Mining Techniques for the Life Sciences - (978-1-4939-3570-3)

2108/266456 - 2016 - SIGNOR: A database of causal relationships between biological entities
Perfetto, Livia; Briganti, Leonardo; Calderone, Alberto; Iannuccelli, Marta; Langone, Francesca; Licata, Luana; Marinkovic, Milica; Pavlidou, Theodora; Santonico, Elena; Spada, Filomena; Castagnoli, Luisa; Cesareni, Giovanni - 01 - Articolo su rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford : Oxford University Press) pp. D548-D554 - issn: 1362-4962 - wos: WOS:000371261700076 (167) - scopus: 2-s2.0-84976871607 (180)

2108/100777 - 2015 - VirusMentha: a new resource for virus-host protein interactions
Licata, Luana; Cesareni, Giovanni - 01 - Articolo su rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. 588-592 - issn: 0305-1048 - wos: WOS:000350210400088 (114) - scopus: 2-s2.0-84941128057 (126)

2108/241777 - 2015 - The complex portal - An encyclopaedia of macromolecular complexes
Licata, Luana - 01 - Articolo su rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford : Oxford University Press) pp. D479-D484 - issn: 1362-4962 - wos: WOS:000350210400073 (69) - scopus: 2-s2.0-84946048367 (66)

2108/129185 - 2015 - SIGNOR: a database of causal relationships between biological entities
Iannuccelli, Marta; Licata, Luana; Peluso, Daniele; Santonico, Elena; Castagnoli, Luisa; Cesareni, Giovanni - 01 - Articolo su rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. 548-554 - issn: 0305-1048 - wos: WOS:000371261700076 (168) - scopus: 2-s2.0-84976871607 (180)

2108/124592 - 2015 - Tools and data services registry: a community effort to document bioinformatics resources
Cesareni, Giovanni; Helmer Citterich, Manuela; Licata, Luana - 01 - Articolo su rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. gkv1116- - issn: 0305-1048 - wos: WOS:000371261700005 (82) - scopus: 2-s2.0-84976872277 (108)

2108/96339 - 2014 - The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases
Licata, Luana; Cesareni, Giovanni - 01 - Articolo su rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. D358-D358-63 - issn: 0305-1048 - wos: WOS:000331139800054 (987) - scopus: 2-s2.0-84891799734 (1037)

2108/77888 - 2012 - MINT, the molecular interaction database: 2012 update
Licata, Luana; Sacco, Francesca; Santonico, Elena; Castagnoli, Luisa; Cesareni, Giovanni - 01 - Articolo su rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. D857-D857-61 - issn: 0305-1048 - wos: WOS:000298601300128 (748) - scopus: 2-s2.0-84860918589 (812)

2108/96329 - 2011 - Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases
Licata, Luana; Castagnoli, Luisa; Cesareni, Giovanni - 01 - Articolo su rivista
paper: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. S8-S8 - issn: 1471-2105 - wos: WOS:000303932700008 (12) - scopus: 2-s2.0-80053430329 (12)

2108/96328 - 2011 - The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text
Licata, Luana; Castagnoli, Luisa; Cesareni, Giovanni - 01 - Articolo su rivista
paper: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. S3-S3 - issn: 1471-2105 - wos: WOS:000303932700003 (88) - scopus: 2-s2.0-80053423937 (116)

2108/8398 - 2010 - MINT, the molecular interaction database: 2009 update
Licata, Luana; Castagnoli, Luisa; Cesareni, Giovanni - 01 - Articolo su rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. D532-9- - issn: 0305-1048 - wos: WOS:000276399100086 (391) - scopus: 2-s2.0-75549083295 (437)

2108/19076 - 2010 - The FEBS Letters/BioCreative II.5 experiment: making biological information accessible
Ceol, Arnaud; Licata, Luana; Cesareni, Giovanni - 01 - Articolo su rivista
paper: NATURE BIOTECHNOLOGY (New York, NY : Nature Pub. Co., [1996-) pp. 897-899 - issn: 1087-0156 - wos: WOS:000281719100009 (28) - scopus: 2-s2.0-77956665000 (34)

2108/8673 - 2010 - Enriching the viral-host interactomes with interactions mediated by SH3 domains
Licata, Luana; Castagnoli, Luisa; Cesareni, Giovanni - 01 - Articolo su rivista
paper: AMINO ACIDS (Wien: Springer Verlag) pp. 1541-7- - issn: 0939-4451 - wos: WOS:000277133900029 (8) - scopus: 2-s2.0-77955890900 (8)

2108/19075 - 2009 - Recurated protein interaction datasets
Licata, Luana; Cesareni, Giovanni - 01 - Articolo su rivista
paper: NATURE METHODS (New York, NY : Nature Pub. Group, c2004-) pp. 860-861 - issn: 1548-7091 - wos: WOS:000272187200003 (42) - scopus: 2-s2.0-73349085604 (44)

2108/30835 - 2008 - Searching the MINT database for protein interaction information
Cesareni, Giovanni; Licata, Luana - 01 - Articolo su rivista
paper: CURRENT PROTOCOLS IN BIOINFORMATICS (New York : Wiley, c2003-) pp. - - issn: 1934-3396 - wos: (0) - scopus: 2-s2.0-57549096908 (9)

2108/31215 - 2008 - Protein interactions: integration leads to belief
Licata, Luana; Cesareni, Giovanni - 01 - Articolo su rivista
paper: Trends in Biochemical Sciences () pp. 241-242 - issn: 9680004 - wos: WOS:000257451300002 (26) - scopus: 2-s2.0-44749093999 (31)

2108/31211 - 2008 - Linking entries in protein interaction database to structured text: The FEBS Letters experiment
Licata, Luana; Cesareni, Giovanni - 01 - Articolo su rivista
paper: FEBS LETTERS (Elsevier BV:PO Box 211, 1000 AE Amsterdam Netherlands:011 31 20 4853757, 011 31 20 4853642, 011 31 20 4853641, EMAIL: nlinfo-f@elsevier.nl, INTERNET: http://www.elsevier.nl, Fax: 011 31 20 4853598) pp. 1171-1177 - issn: 0014-5793 - wos: WOS:000255522100003 (54) - scopus: 2-s2.0-41249090605 (62)

2108/87991 - 2008 - MINT and IntAct contribute to the second BioCreative challenge: serving the text-mining community with high quality molecular interaction data
Ceol, Arnaud; Licata, Luana; Castagnoli, Luisa; Costa, Silvio; Cesareni, Giovanni - 01 - Articolo su rivista
paper: GENOME BIOLOGY (BioMed Central) pp. - - issn: 1474-760X - wos: WOS:000278173900005 (25) - scopus: 2-s2.0-51049101706 (27)

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